Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq6 145 5e-29 seq15 96.9 2e-14 seq11 91.5 1e-12 seq8 91.5 1e-12 >seq6 Length=119458736 Score = 145 bits (160), Expect = 5e-29 Identities = 363/539 (67%), Gaps = 12/539 (2%) Strand=Plus/Plus Query 474386 AAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTT 474445 || || ||||||||||||||||| || || | | |||| || ||| ||||| ||| Sbjct 88642418 AAGGTGGAAATAATTGCCAATGATCAGGGGACT-GAACCACCCCAAGCTATGTCATCTTT 88642476 Query 474446 ACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505 ||| | || || | ||||| |||||||| || | |||| ||| ||||| Sbjct 88642477 ACTAACACCAGACGATTGATTGGTGATGCTGCAAAGAACCAAGTCGCAATGAATCCCACC 88642536 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 || || |||||||||| ||| | | | ||| | | ||||||||| | |||||| Sbjct 88642537 AACACGGTTTTTGATGCCAAACAACTTACTGGATGAAGATTTGATGATGCTGTTGTCCAG 88642596 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA 474625 |||| |||| |||||||| || | |||| ||||| || ||| | ||| | | || Sbjct 88642597 TCTGTTATGAAACATTGGCCCTTCATGGTGGCAAATGATGCTGGCAGACCTAAGGTTTAA 88642656 Query 474626 G--CAATACACGCAGGTGAAACTAAACAATTTTCA-CCGGAACAAATTTCTTCAATGGTT 474682 | |||||| | || || || ||| | |||| | || || | || || || ||||| Sbjct 88642657 GTAGAATACAAG--GGAGAGAC-AAAGAGTTTTTATCCAGAGGAGATGTCATCCATGGTC 88642713 Query 474683 TTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGA-AGTAACTGATGCAG 474740 | | || | |||| ||| || || || | ||||| |||| || || |||| | Sbjct 88642714 CT-GAAAAGAGGAAAGAAATTGCAGAAGTC-TGCCTTGG-GAAGACTGTTACCAATGCTG 88642770 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | | || || || || || |||||||| ||||| ||||| || || |||||||| ||| Sbjct 88642771 TTGTCACAGTACCTGCCTACTTTAATGACTCTCAGCGTCAGGCTACCAAAGATGCTAGAA 88642830 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 ||||| ||||| ||| | | || || | ||||||||| || || || |||| | Sbjct 88642831 CTATTGCTGGTCTCCGTGTACTTAGAATCATCAGTGAACCAACTGCTGCTGCTATTGCCT 88642890 Query 474861 ATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGGT 474919 |||| | || || ||| || ||| |||||| | |||||||||| || ||| Sbjct 88642891 ATGGCTTAGACAAAAATGTTGGAGCAGAGAGAAATGTGCTGATCTTTGATTTAGGTGGT 88642949 Score = 87.8 bits (96), Expect = 1e-11 Identities = 127/178 (71%), Gaps = 1/178 (1%) Strand=Plus/Plus Query 475989 CCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAAT 476048 |||| || ||||| || || | ||| ||| || | | ||||||||| ||| Sbjct 88643610 CCACCTACTCTGACAACCAGCCTGGTGTTCTCATTCAGGTTTATGAAGGTGAGTGAACCA 88643669 Query 476049 TCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCA 476108 | || || ||||| ||| ||||| | ||| | || ||| || |||||||| ||| Sbjct 88643670 TGACCAAGGATAACAACTTGCTTGGCAAGTTTGAACTCACAGGCATACCTCCTGC-CCCT 88643728 Query 476109 GAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGT 476166 | | ||| |||| |||||||| ||||||||||||||||| | ||| ||||| ||||| Sbjct 88643729 GTAGTGTTTCTCAGATTGAAGTCACTTTTGATATTGATGCCAGTGGCATTCTCAATGT 88643786 >seq15 Length=85296676 Score = 96.9 bits (106), Expect = 2e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || || ||||| ||| ||||| | ||| | || || || |||||||| ||| | Sbjct 34217596 ACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACGGGCATACCTCCTGCCCCCCGT 34217537 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||||||| |||||||| ||||||||||||||||| ||||| || || |||||| || Sbjct 34217536 GGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAATGGCATCCTCAATGTTTCT 34217477 Query 476171 GCTTGTGATAA 476181 ||| ||||| Sbjct 34217476 GCTGTGGATAA 34217466 Score = 91.5 bits (100), Expect = 1e-12 Identities = 218/327 (67%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||||||||| ||||||||||| |||| ||||| || || | | | |||| || Sbjct 34218596 ACTGCTTGTGAGCGTGCTAAGCGCACTCTCTCTTCCAGCACCCAGGCCAGTATTGAGATT 34218537 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 ||||| || | ||||||||| || | |||| |||||| | || ||||||||| Sbjct 34218536 GATTCCCTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCCGATTTGAAGAA 34218477 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| | || | || | || || || || ||| || || ||| | Sbjct 34218476 TTGAATGCTGACTTGTTCCGTGGCACCCTGGACCCTGTGGAGAAAGCCCTTAGGGATGCC 34218417 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||||| ||||| || || | ||||| ||||| | || || || ||||| | || || Sbjct 34218416 AAACTGGACAAGTCTCAGATTCATGATATTGTCTTGGTTGGTGGCTCAACCCGTATCCCC 34218357 Query 475736 AAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAA 475794 || || ||||| | || | | || || || ||| | | ||| | || | || Sbjct 34218356 AAGAT-TCAGAAACTTCTCCAGGACTTCTTCAACGGGAAAGAACTGAATAAGAGCATCAA 34218298 Query 475795 TCCTGATGAAGCTGTTGCATATGGAGC 475821 |||||||| |||||||||||||| || Sbjct 34218297 CCCTGATGAGGCTGTTGCATATGGTGC 34218271 Score = 89.7 bits (98), Expect = 3e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || || || || ||||||||||| ||||| ||||| || || |||||||| |||| ||| Sbjct 34219039 ACAGTACCTGCCTATTTTAATGACTCTCAGCGTCAGGCTACCAAAGATGCTGGAACTATT 34218980 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 || ||||| || || | || || || ||||| ||||| || || || |||| ||||| Sbjct 34218979 GCTGGTCTCAACGTACTTCGAATCATCAATGAGCCAACTGCTGCTGCTATTGCCTATGG 34218921 >seq11 Length=107310763 Score = 91.5 bits (100), Expect = 1e-12 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| ||||||| ||||||| ||||||||||| |||||| | ||||| || ||||| Sbjct 96117774 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 96117715 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACC 474840 |||||||| |||| ||||| || || ||||| | | || || ||||| || Sbjct 96117714 AAAGATGCTGGAACTATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 96117662 >seq8 Length=113384836 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| |||||||| || || | ||| || |||||||||||||||||||| Sbjct 107174094 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 107174035 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || || ||||| || ||| ||| | ||||| | | | | || || || || Sbjct 107174034 ATCCTGGATCTTGGCCTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCGAGAGTGAT 107173975 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| |||||||| || Sbjct 107173974 GGTCTTCCCCGTCAGGGTCTTCACGAAAATCTG 107173942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268044338585312