Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq8 369 4e-97 seq3 170 2e-37 seq1 167 3e-36 seq9 98.7 1e-15 >seq8 Length=113384836 Score = 369 bits (408), Expect = 4e-97 Identities = 680/985 (69%), Gaps = 13/985 (1%) Strand=Plus/Minus Query 160053 AGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGCG 160112 ||||| ||||||| ||| |||| ||| || | ||||| ||| ||||||||| || || Sbjct 52849621 AGATGCTCGTCCAAACACTGGATGGCAAAGAGGTCAATGTCCGTGTCGAATTTGTTGGCA 52849562 Query 160113 AACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACG 160172 |||| ||||| ||| | || ||||| || ||| || | ||||| ||||| || Sbjct 52849561 AACAAGTGGTGCACGTGCAACAG---CCAGTTCAAGTCACCAGCTCCGAAAACGCACACA 52849505 Query 160173 GAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCG 160232 || || | ||| |||||| |||| |||||||| | || || || | ||||| ||||| Sbjct 52849504 GAGCGAACGTGGACGCCGCTGCACGGCGGGTAGGGGGCGCCCTTGGAAACGTCTCCTTCA 52849445 Query 160233 TAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA- 160291 |||||||||| || ||||||||||| ||||| ||||||||||| ||||| || || || Sbjct 52849444 AAGTACTGCCATTTAACAAACCTGGCAATCGCTTGCATGTCGGACGTGTCATACTTATAG 52849385 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | ||| || | | | |||| | |||| || | ||| | |||||||| || | || Sbjct 52849384 CTTAAGGACAATGACCCTGGGA-CTTCGGGGATCCTCTGAATAGTGGCCCAGAGATACTC 52849326 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 ||| |||||||| ||||| || | ||| ||||| |||| | || || | | || Sbjct 52849325 GTCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGTATATTTTGGTTCTGGAG 52849266 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 |||| || || || | || ||||| || || ||||| || || | ||| | Sbjct 52849265 CACGTACTCCACATATTCCCTACTGACCACAAAATAGGCACTGCCTGAAAACAGAGGTGT 52849206 Query 160472 GGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530 | ||| || ||| ||| ||| || |||| | || | ||| ||||| | Sbjct 52849205 TTCAAGAGGTGGA-TGTATTTTGTCAGTCCCCATGTTTGTCAGCTTTCCATTCACGACTT 52849147 Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590 | | |||| |||||||| | |||| || | |||||| || || ||||| ||| Sbjct 52849146 CATAATGCTTTTTCCACCTTTCTTTCTTATGGGATGGCATTTTCTCTGTTTCTAGGTTGT 52849087 Query 160591 TGGCACCG-TCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAG 160649 | | || || | | || |||| | |||| || || ||||| || || | ||||| Sbjct 52849086 TCTCGCCCATCAATAGCTTG-AGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAA 52849028 Query 160650 TCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTC 160709 || ||||||| | |||||||| ||||||||| || ||| | || |||||| | Sbjct 52849027 TCCATACCGCAGAGGTTTATCAGGTACTTCCAGCCTGCATTCATCTGGTAGAGGTCCTGC 52848968 Query 160710 ATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTA 160769 ||||| |||| || ||||| || ||||||||||| || ||||| ||| |||| || | | Sbjct 52848967 ATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGACGCATACACCACGCTCTCCAGCTGA 52848908 Query 160770 CTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--AAAGAACA 160827 ||||| |||||||| ||| ||| || || ||| | ||| || | ||| ||| | | Sbjct 52848907 CTGGCGACAAAGACATTACTGAAGCAGGATGCGA-TGCCAACAGCTGCAGCCAAAAAGGA 52848849 Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 | || || | ||| |||||||| | ||||| | ||||||||| |||||||||| Sbjct 52848848 T-TTCTCTGATTTTGCATCCACGTGAATACAATAGAAATTCTGAGGCATATAGATGGCCC 52848790 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 | || | ||| || | ||| || || || ||||| | ||| ||||| || ||||| |||| Sbjct 52848789 TCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAGAATATGCTATTGGAA 52848730 Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007 | | | ||| || ||| || | | || | || || ||| |||| || ||| || Sbjct 52848729 ATCCCGCCTCTTCTTTACTAAGTGGTTCTGTAATATATTTGCGCTTCTTAATGAAAGAAG 52848670 Query 161008 CACAATCCCGCGTCATGTTGATATA 161032 ||||||| | |||||||| || || Sbjct 52848669 CACAATCACCAGTCATGTTTATGTA 52848645 >seq3 Length=121430405 Score = 170 bits (188), Expect = 2e-37 Identities = 293/423 (69%), Gaps = 7/423 (2%) Strand=Plus/Plus Query 168048 ACCTTCCAGAATATTACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTAAGCCA 168107 ||||||||| | || | ||| || || || || | |||||||| || ||||||| | | Sbjct 36419932 ACCTTCCAGGAGATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTAGGTGA 36419991 Query 168108 TTGGTAAAAGACTCGAT-GTGAAGCGATACGGTAGGTGGGACGTATAGAGTCAAGCACGT 168166 | | | | | | || |||||| |||| || || | | ||||| | ||| | Sbjct 36419992 TCT-TCAGATAGTTTATAGTGAAGGAATACTGTGGG-----CAAAGAGAGTGAGGCAGGC 36420045 Query 168167 TTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCCTTCGTC 168226 | |||| || ||||| || || || || || || ||||||||| || | || | || || Sbjct 36420046 TATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGCACTTGTAACACGCCTCATC 36420105 Query 168227 CTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGTTATGTT 168286 |||| |||||||||||| || || | |||||||| ||| |||| ||| || ||||| Sbjct 36420106 TTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGAGTCCCAGCTGGGTGATGTT 36420165 Query 168287 CACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGTGGCCAT 168346 | || || || | ||| || |||||||| || ||||||| |||| ||||| ||| Sbjct 36420166 TATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGTTCTTGCTGCAGGTGATCAT 36420225 Query 168347 GTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTTATCGGT 168406 ||| || ||||| ||||| || || ||||| || || |||| ||| || | | Sbjct 36420226 GTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAAAACTTCCTGGGGATT 36420285 Query 168407 CTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATCTTGAGTTAC 168466 | ||| || ||||| | ||||| || ||||||||||| ||| |||| || || || Sbjct 36420286 TTTCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCCCTCTTACATCCTGGGTCAC 36420345 Query 168467 GAC 168469 || Sbjct 36420346 CAC 36420348 >seq1 Length=158337067 Score = 167 bits (184), Expect = 3e-36 Identities = 227/317 (72%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 ||||| | ||| | | |||| || ||||| || || || || || || ||||||||| || Sbjct 57576240 AGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGCACTTG 57576181 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || | || || |||| |||||||||||| || || | |||||||| ||| ||| Sbjct 57576180 TAACACGCCTCATCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGAGTCCC 57576121 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || ||||| | || || || | ||| || |||||||| |||||||||||| Sbjct 57576120 AGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCGTGGTTCTCG 57576061 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||| ||||| |||||| || ||||| ||||| || || ||||| || || |||| | Sbjct 57576060 CTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAAA 57576001 Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGC 168452 || || | | | ||| || ||||| | ||||| || ||||||||||| ||| Sbjct 57576000 ACTTCCTGGGGATTTTTCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCCCTCTT 57575941 Query 168453 TCATCTTGAGTTACGAC 168469 |||| || || || || Sbjct 57575940 ACATCCTGGGTCACCAC 57575924 Score = 114 bits (126), Expect = 1e-20 Identities = 160/221 (72%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 167883 GTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTT 167941 |||| || ||| ||| || ||||| |||| ||||| |||| ||| ||||| || || Sbjct 57578907 GTTTCCCTGTA-GTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCC---TT 57578852 Query 167942 TCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATT 168001 || || || |||| || ||||| | || | ||||| || ||| ||| |||||||| Sbjct 57578851 CCCCACCTGTGTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTTCCATT 57578792 Query 168002 GCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATAT 168061 | | ||| | ||| | | || ||||||||||||||||| || ||||||||| | || Sbjct 57578791 GGGGTGTGACACGATCTCGGTACTGTTCTCAATCCCTGACCCAAAGACCTTCCAGGAGAT 57578732 Query 168062 TACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 | ||| || || || || | |||||||| || ||||||| Sbjct 57578731 CATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 57578691 >seq9 Length=105708250 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241 |||| | |||||| | ||| | | | |||||| | |||| | | ||||| || Sbjct 54432855 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTGTCTACTTCCTTCAGATACTTAG 54432914 Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301 |||| |||| || |||| |||||| | ||||| || |||| | || |||||| || | Sbjct 54432915 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 54432974 Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361 | ||||| |||| || || || || ||||| | || || | | || | || | Sbjct 54432975 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 54433034 Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421 ||||| |||||||| |||||| || |||| |||||||||||||| | | ||| || | Sbjct 54433035 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 54433094 Query 176422 TACA 176425 | || Sbjct 54433095 TGCA 54433098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577196515285440