Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq19 152 1e-31 seq8 152 1e-31 seq17 145 1e-29 seq3 125 1e-23 seq1 123 5e-23 seq9 113 9e-20 seq18 107 4e-18 seq12 98.7 2e-15 >seq19 Length=64057457 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||| || || | |||||| || || |||||||| || || |||||||| Sbjct 33853935 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 33853994 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || || |||||||| || || || || || || || Sbjct 33853995 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 33854054 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || || || || || || ||| | || || ||| Sbjct 33854055 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACT 33854114 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| |||| ||||| || || |||||||| Sbjct 33854115 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 33854161 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| ||| || || | |||||| || || |||||||| || || ||||||| Sbjct 33854161 TACCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAG 33854220 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || || || || |||||||| || || || || || || | Sbjct 33854221 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGG 33854280 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| || ||||| || || || || || || || ||| | || || | Sbjct 33854281 GAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCA 33854340 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || |||||||| |||| ||||| || || |||||||| Sbjct 33854341 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 33854389 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| ||| || || | |||||| || || |||||||| || || ||||||| Sbjct 33854617 TACCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAG 33854676 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || || || || |||||||| || || || || || || | Sbjct 33854677 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGG 33854736 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| || ||||| || || || || || || || ||| | || || | Sbjct 33854737 GAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCA 33854796 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | |||| || || |||||||| |||| || || || || ||||||||| Sbjct 33854797 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATT 33854846 >seq8 Length=113384836 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||| || |||||||| || || || || || || ||||| | | | | || ||||| Sbjct 107174147 ACTAGATGAAGAGTAGACTCCTTTTGCATGTTGTAGTCAGACAAAGTACATCCATCTTCC 107174088 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||| || ||||||||||| |||||||| || || ||||| |||||||||||||| || Sbjct 107174087 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 107174028 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| || ||||||||||| | ||||| || || || || | ||| || ||||| Sbjct 107174027 ATCTTGGCCTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCGAGAGTGATGGTCTTC 107173968 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||| ||||| || || |||||||| Sbjct 107173967 CCCGTCAGGGTCTTCACGAAAATCTGCAT 107173939 >seq17 Length=75158596 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||| || || | |||||| || || |||||||| || || |||||||| Sbjct 55051492 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAA 55051433 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | |||||||| || || || || |||| ||| || || || || || || || Sbjct 55051432 AGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAGGATGAGCCTCTGCTGGTCAGGGGGA 55051373 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || || || || || || ||| | || || || Sbjct 55051372 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 55051313 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| || || |||||||| |||| || || || || ||||||||| Sbjct 55051312 TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATT 55051265 Score = 109 bits (120), Expect = 1e-18 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || || | ||| ||||| | | | | || |||| ||||| Sbjct 41695917 TGAAGAGTGGACTCCTTTTGAATGT-ATAGTCAGACAAAGTACATCCATCTTTCAGTTGC 41695859 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 | ||||||||||| ||||||| || || ||||| |||||||||||||| || | ||| Sbjct 41695858 CTCCCAGCAAAGATCAGTCTTTTCTGGTCAGGAGGAATTCCTTCCTTATCCTGGACCTTG 41695799 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | ||||||||||| || ||||| || || || | | ||| || ||||| || || Sbjct 41695798 ACCTTTACATTTTCTATGGTATCCGAGGGCTCGACCT-GAGAGTGATGGTCTTCCCCATC 41695740 Query 82788 AACGTCTTTACAAATATCTGCA 82809 | ||||| || || ||||||| Sbjct 41695739 AGCGTCTCCACGAAAATCTGCA 41695718 >seq3 Length=121430405 Score = 125 bits (138), Expect = 1e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||| || ||||| || || || || || || || ||||| | | | || |||| Sbjct 20116388 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTTC 20116329 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||| || ||||||||||| |||||||| || || ||||| |||| |||||||| || Sbjct 20116328 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCTTTCCTTATTCTGG 20116269 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| || ||||||||||| || ||||| || || || || | ||| || | || Sbjct 20116268 ATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACCTCGAGAGTGATGATGTTC 20116209 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| ||| ||||| || || |||||||| Sbjct 20116208 CCTATCAGAGTCTTCACGAAAATCTGCAT 20116180 >seq1 Length=158337067 Score = 123 bits (136), Expect = 5e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||||| || ||||||||||| |||||||| || || ||||| ||||||||| Sbjct 46492871 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 46492930 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||| || ||||| || ||||||||||| | ||||| || || || | | ||| Sbjct 46492931 TTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCCACCTTGACAGTG 46492990 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| |||||| ||||| | || |||||||| Sbjct 46492991 ATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCAT 46493028 >seq9 Length=105708250 Score = 113 bits (124), Expect = 9e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| |||||||||||| || || || || || ||||||||||| || || ||| Sbjct 19848147 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 19848088 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || || || || |||| | ||||| |||||||| | ||| |||||||| || Sbjct 19848087 AAGAAAAACAACCAAGTCTCTTTTCTTCACGTGTATCATCACTGTACCATGTTTACGTTG 19848028 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 | ||| | || ||||| ||| |||| ||||| || Sbjct 19848027 TGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 19847993 >seq18 Length=66004023 Score = 107 bits (118), Expect = 4e-18 Identities = 162/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| ||||| |||| || ||||||||||| || ||| ||| || || || ||||| Sbjct 4961365 CCTCCCCTCAAGTGCAGGACCAAGTGCAGAGTGGACTCT--CTGGATGTTGTATTCAGAC 4961308 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| || |||||| | || || || || ||| | || Sbjct 4961307 AGGGTGCACCCATCTTC-AGCTGTTTCCCTGCAAAGGTCAGCCTCTGCTGGTCTAGGGGG 4961249 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || || ||||||||||| || || ||||| || || | |||| | || || || Sbjct 4961248 ATGCCCTCTTTGTCTTGAATCTTGGCCTTGACATTCTCGATGGGATCACTGGGCTCCACC 4961189 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | | ||||| ||| | ||||| | || |||||||| Sbjct 4961188 TCCAGGGGGTTGGTCTT-ATGGTCTAGGTCTTCATGAAGATCTGCAT 4961143 >seq12 Length=91163125 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||| || || | |||||| || || |||||||| || || |||||||| Sbjct 5439550 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 5439609 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | || ||||| || || || || |||||||| || | || || || ||||| Sbjct 5439610 AGAGTGTGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCTTCTGCTGGTCAGGAGGA 5439669 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTT 82732 || ||||||||||| || ||||| || || Sbjct 5439670 ATGCCTTCCTTATCCTGGATCTTGGCCTT 5439698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981787649545816