Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq8 268 1e-66 seq3 221 1e-52 seq1 206 3e-48 >seq8 Length=113384836 Score = 268 bits (296), Expect = 1e-66 Identities = 662/1001 (66%), Gaps = 9/1001 (1%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| |||||| | |||||||| || || | ||| ||| Sbjct 52849638 CCAGGGCTTTATGCCTTAGATGCTCGTCCAAACACTGGATGGCAAAGAGGTCAATGTCCG 52849579 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||||| ||||| || |||| ||| ||| || | || | ||| || | || || | Sbjct 52849578 TGTCGAATTTGTTGGCAAACAAGTGGTGCACGTGC---AACAGCCAGTTCAAGTCACCAG 52849522 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| |||||||| || || ||||| ||||||||||||||||| || |||| || | Sbjct 52849521 CTCCGAAAACGCACACAGAGCGAACGTGGACGCCGCTGCACGGCGGGTAGGGGGCGCCCT 52849462 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | || || || || |||| ||||| ||||| ||||| | || || |||||||||| Sbjct 52849461 TGGAAACGTCTCCTTCAAAGTACTGCCATTTAACAAACCTGGCAATCGCTTGCATGTCGG 52849402 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | ||||| ||||| || | | | || | || || || | || | ||||| | || Sbjct 52849401 ACGTGTCATACTTATAGCTTAAGGACAATGACCCTGGGACTTCGGGGATCCTCTGAATAG 52849342 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | |||||||| || || || || || | ||||||||| |||| | Sbjct 52849341 TGGCCCAGAGATACTCGTCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGTA 52849282 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| | | || | ||| || || ||| | || | ||| || || || | Sbjct 52849281 TATTTTGGTTCTGGAGCACGTACTCCACATATTCCCTACTGACCACAAAATAGGCACTGC 52849222 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| ||| | | ||| || | |||||| ||| |||| | | Sbjct 52849221 CTGAAAACAGAGGTGTTTCAAGAGGTGGATGTATTTTGTCAGTCCCCATGTTTGTCAGCT 52849162 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598 |||| | ||||| | | ||| ||||||| | ||||| || | | | | Sbjct 52849161 TTCCATTCACGACTTCATAATGCTTTTTCCACCTTTCTTTCTTATGGGATGGCATTTTCT 52849102 Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658 | || ||||| |||| ||| ||| ||| |||| | || || || || |||| Sbjct 52849101 CTGTTTCTAGGTTGTTCTCGCCCATCAATAGCTTGAGCTTCCTGACAATTTCCAGGTTGG 52849042 Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718 | |||| ||||| || | |||||||| || || | || ||||| | | | Sbjct 52849041 TTTTAATAGGAAAATCCATACCGCAGAGGTTTATCAGGTACTTCCAGCCTGCATTCATCT 52848982 Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778 ||| || ||||| | ||||| || || ||||| || || ||||| ||||| ||||| | Sbjct 52848981 GGTAGAGGTCCTGCATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGACGCATACACCA 52848922 Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCC--CATC-A 162835 ||||||||| | | |||||||||||||||| ||| || || | || || || | Sbjct 52848921 CGCTCTCCAGCTGACTGGCGACAAAGACATTACTGAAGCAGGATGCGATGCCAACAGCTG 52848862 Query 162836 CGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAG 162895 | |||| || | || || | ||| ||| ||||| | || || | |||||||| Sbjct 52848861 CAGCCAAAAAGGATTTC---TCTGATTTTGCATCCACGTGAATACAATAGAAATTCTGAG 52848805 Query 162896 GGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAG 162955 | |||||||||||||| | || || | ||| || || || || || ||||| |||| Sbjct 52848804 GCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAG 52848745 Query 162956 AATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCGGT 163015 |||| ||||| || || | ||||| || ||| || | |||||| || ||||| | Sbjct 52848744 AATATGCTATTGGAAATCCCGCCTCTTCTTTACTAAGTGGTTCTGTAATATATTTGCGCT 52848685 Query 163016 CCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056 | | | || | ||||| || | |||||||| | |||| Sbjct 52848684 TCTTAATGAAAGAAGCACAATCACCAGTCATGTTTATGTAG 52848644 >seq3 Length=121430405 Score = 221 bits (244), Expect = 1e-52 Identities = 302/422 (72%), Gaps = 5/422 (1%) Strand=Plus/Plus Query 171671 ACTTTCCAAAATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCA 171730 || ||||| | || | ||| ||||| | |||| | ||||||||||| || |||| | Sbjct 36419932 ACCTTCCAGGAGATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTAGGTGA 36419991 Query 171731 TCTTCGAAGAACTCATAGTGTAATGACACAGTAGGTGGAACATAGAGTGTCAGACAGGTC 171790 ||||| | | | |||||| | | || || || || |||| || || |||| Sbjct 36419992 TCTTCAGATAGTTTATAGTGAAGGAATACTGTGGG-----CAAAGAGAGTGAGGCAGGCT 36420046 Query 171791 TTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAACACATAAAACAGCCTTCGTCC 171850 | || || || ||||| || ||||| |||||||| | ||| | |||| | || || Sbjct 36420047 ATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGCACTTGTAACACGCCTCATCT 36420106 Query 171851 TCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGAGTCCGAGTTGCGTAATGTTC 171910 |||| |||||| ||||| || || | || || || ||||||| || || || ||||| Sbjct 36420107 TCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGAGTCCCAGCTGGGTGATGTTT 36420166 Query 171911 ACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGATTCTCGCTGAACGTGGCCATG 171970 | | ||||||||| | ||||||||| ||||| || || |||| |||| | ||| |||| Sbjct 36420167 ATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGTTCTTGCTGCAGGTGATCATG 36420226 Query 171971 TTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTATTAAAACTTCTTTGTCGGTT 172030 ||||| ||||| |||||| || || ||||| || || || |||||||| | | || Sbjct 36420227 TTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAAAACTTCCTGGGGATTT 36420286 Query 172031 TGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATTCCCTTTCGTCTTGCGTTACC 172090 | ||||||||||||||||||||||||||||||| | | ||| | || || || ||| Sbjct 36420287 TTCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCCCTCTTACATCCTGGGTCACC 36420346 Query 172091 AC 172092 || Sbjct 36420347 AC 36420348 >seq1 Length=158337067 Score = 206 bits (228), Expect = 3e-48 Identities = 239/322 (74%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || ||||| || ||||| |||||||| | | Sbjct 57576245 CAAAGAGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGC 57576186 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| | || || |||| |||||| ||||| || || | || || || ||| Sbjct 57576185 ACTTGTAACACGCCTCATCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGA 57576126 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | | ||||||||| | ||||||||| ||||| ||||| | Sbjct 57576125 GTCCCAGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCGTGGT 57576066 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||| | ||| ||||||||| ||||| |||||| || || ||||| || || | Sbjct 57576065 TCTCGCTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 57576006 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | |||||||| | | ||| ||||||||||||||||||||||||||||||| | Sbjct 57576005 TCAAAACTTCCTGGGGATTTTTCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCC 57575946 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||| | || || || ||||| Sbjct 57575945 CTCTTACATCCTGGGTCACCAC 57575924 Score = 104 bits (114), Expect = 3e-17 Identities = 157/223 (70%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||||| ||| ||| || |||||||||| ||||| || | ||| ||||| |||| Sbjct 57578910 ACAGTTTCCCTGTAGTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCCT-- 57578853 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| || | || || ||||| | || || ||||| || |||||||| || || Sbjct 57578852 -TCCCCACCTGTGTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTTCCA 57578794 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || | ||| ||| | | ||||| || || || || || || || ||||| | Sbjct 57578793 TTGGGGTGTGACACGATCTCGGTACTGTTCTCAATCCCTGACCCAAAGACCTTCCAGGAG 57578734 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 || | ||| ||||| | |||| | ||||||||||| || |||| Sbjct 57578733 ATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 57578691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578409267622400