Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq8 132 1e-25 seq19 102 2e-16 seq17 95.1 3e-14 >seq8 Length=113384836 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| | || || || || || ||||| ||| Sbjct 107173954 AAGACCCTGACGGGGAAGACCATCACTCTCGAGGTTGAGCCCTCGGATACAGTAGAAAAT 107174013 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || ||| |||||||| ||||| Sbjct 107174014 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 107174073 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || |||||| | || || |||||| Sbjct 107174074 GCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAACATGCAAAAGGAGTCT 107174133 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| || || ||||||||||| Sbjct 107174134 ACTCTTCATCTAGTGTTGAGACTTCG 107174159 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || |||||||||||||| || || | || ||||||| |||||| Sbjct 107174159 CGAAGTCTCAACACTAGATGAAGAGTAGACTCCTTTTGCATGTTGTAGTCAGACAAAGTA 107174100 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||||||| ||||| || || ||||| || | ||| || Sbjct 107174099 CATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 107174056 >seq19 Length=64057457 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||||||||| |||||| |||| Sbjct 33854146 AAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATCGAGAAC 33854087 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| || ||| || || || ||||| Sbjct 33854086 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTT 33854027 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 33854026 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCG 33853967 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 33853966 ACCCTGCACCTGGT 33853953 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| |||| ||||| |||||| |||| Sbjct 33854830 AAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAAC 33854771 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| || ||| || || || ||||| Sbjct 33854770 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTT 33854711 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 33854710 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCG 33854651 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 33854650 ACCCTGCACCTGGT 33854637 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| |||||| |||| Sbjct 33854374 AAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAAC 33854315 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| || ||| || || || ||||| Sbjct 33854314 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTT 33854255 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 33854254 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCG 33854195 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 33854194 ACCCTGCACCTGGT 33854181 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||||||||| |||||| |||| Sbjct 33854602 AAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATCGAGAAC 33854543 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| || ||| || || || ||||| Sbjct 33854542 GTGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCAGCAGAGGCTCATCTTT 33854483 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 33854482 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCG 33854423 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 33854422 ACCCTGCACCTGGT 33854409 >seq17 Length=75158596 Score = 95.1 bits (104), Expect = 3e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || ||||| ||||| |||| ||||| |||||| |||| || ||| Sbjct 53142535 ACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGGC 53142594 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| ||||| || || || ||| || || || ||||| ||||| || Sbjct 53142595 AAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAA 53142654 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | || || | || |||||| ||||||||||||| ||||| ||| Sbjct 53142655 CAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCAC 53142714 Query 206374 CTTGT 206378 || || Sbjct 53142715 CTGGT 53142719 Score = 95.1 bits (104), Expect = 3e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || |||||| |||| ||||| |||||| |||| || ||| Sbjct 53143219 ACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCC 53143278 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| ||||| || || || ||| || || || ||||| ||||| || Sbjct 53143279 AAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAA 53143338 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | || || | || |||||| ||||||||||||| ||||| ||| Sbjct 53143339 CAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCAC 53143398 Query 206374 CTTGT 206378 || || Sbjct 53143399 CTGGT 53143403 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| |||| ||||| |||||| |||| Sbjct 55051281 AAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAAC 55051340 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| || ||| || || || ||| | Sbjct 55051341 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCCTT 55051400 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| ||||||| || | ||| | | ||||||||| ||||||||||||| Sbjct 55051401 GCCGGCAAGCAGCTGGAAGACGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCA 55051460 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 55051461 ACCCTGCACCTGGT 55051474 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| |||| ||||| |||||| |||| || ||| Sbjct 53142991 ACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCC 53143050 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| ||||| || || || ||| || || || ||||| ||||| || Sbjct 53143051 AAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAA 53143110 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | || || | || |||||| ||||||||||||| ||||| ||| Sbjct 53143111 CAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCAC 53143170 Query 206374 CTTGT 206378 || || Sbjct 53143171 CTGGT 53143175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181773193303624