Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_025963.1 Length=139981 Score E Sequences producing significant alignments: (Bits) Value seq16 84.2 2e-11 >seq16 Length=81724687 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 133104 TGGGGTGCCAAGCACTCTCGGAGATGATCCAGTTCTACCTGGAAGAAGTCATGCCGCAGG 133163 |||| |||||||| | ||||| ||||||||||| ||||||||||| || ||||| |||| Sbjct 4405076 TGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAAGAGGTGATGCCACAGG 4405017 Query 133164 CAGAGAATCACGGACC 133179 | ||||| ||||| || Sbjct 4405016 CTGAGAACCACGGGCC 4405001 Score = 82.4 bits (90), Expect = 7e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 133311 AGCTCCAGGAACGCGGTGTGTACAAGGCCATGAGCGAGTTCGACATCTTCATCAACTACA 133370 ||||||| || | ||||| ||||| |||||||| ||||| ||||||||||||||||||| Sbjct 4402776 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 4402717 Query 133371 TAGAGACATA 133380 |||| || || Sbjct 4402716 TAGAAACCTA 4402707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447793601019840