Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq23 107 6e-20 seq29 104 7e-19 seq15 104 7e-19 seq18 102 3e-18 seq1 102 3e-18 seq17 98.7 3e-17 seq12 98.7 3e-17 seq7 98.7 3e-17 seq30 91.5 5e-15 seq19 89.7 2e-14 seq13 89.7 2e-14 seq24 87.8 6e-14 seq5 80.6 8e-12 >seq23 Length=52530062 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 30006584 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 30006525 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 30006524 TCCCGGGTTTCGGC 30006511 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 30822399 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 30822340 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 30822339 TCCCGGGTTTCGGC 30822326 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 30016598 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 30016657 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 30016658 CCGGGTTTCGGC 30016669 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 29959424 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 29959483 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 29959484 TCCCGGGTTTCGGC 29959497 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 29874968 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 29875027 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 29875028 CCGGGTTTCGGC 29875039 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 29988373 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 29988432 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 29988433 CCGGGTTTCGGC 29988444 Score = 95.1 bits (104), Expect = 4e-16 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835 |||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| | Sbjct 49828416 TAGCTCAGCTGGGAGAGCGTTACACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGTT 49828357 Query 2836 TCAGC 2840 || || Sbjct 49828356 TCGGC 49828352 Score = 86.0 bits (94), Expect = 2e-13 Identities = 60/67 (90%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 2771 TGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTCAACCC 2829 |||| |||||||| |||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 29994023 TGAAATAGCTCAGCTGGGAGAGAGTTAGACTGAAGATCTTAAAGGTCCCTGGTTCAACCC 29993964 Query 2830 CGGGCTT 2836 | || || Sbjct 29993963 CAGGTTT 29993957 >seq29 Length=51505224 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 37782345 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 37782404 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 37782405 CCGGGTTTCGGC 37782416 >seq15 Length=85296676 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 84101829 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 84101770 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 84101769 CCGGGTTTCGGC 84101758 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 84107250 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 84107191 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 84107190 CCGGGTTTCGGC 84107179 Score = 95.1 bits (104), Expect = 4e-16 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 2771 TGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCC 2830 |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 83314394 TGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAGTCCC 83314453 Query 2831 GGGCTTCAGC 2840 || ||| || Sbjct 83314454 AGGTTTCGGC 83314463 >seq18 Length=66004023 Score = 102 bits (112), Expect = 3e-18 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 ||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| Sbjct 23943599 ATGGCTGAAATAGCTCAATTGGGAGAGCATTAGTCTGAAGATCTAAAGGTCCCTGGTTCA 23943658 Query 2826 ACCCCGGGCTT 2836 | ||| || || Sbjct 23943659 ATCCCAGGTTT 23943669 >seq1 Length=158337067 Score = 102 bits (112), Expect = 3e-18 Identities = 64/69 (93%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 95195159 GGCTGAAATAGCTCAGTTGAGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 95195218 Query 2828 CCCGGGCTT 2836 ||| || || Sbjct 95195219 CCCAGGTTT 95195227 >seq17 Length=75158596 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 53130612 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 53130671 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 53130672 CCGGGTTTCGGC 53130683 Score = 89.7 bits (98), Expect = 2e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| || ||| ||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct 53869880 TGGCCAAAATAGTTCAGTTGGGAGAGTGTTAGACTAAAGATCTAAAGGTCCCTGGTTCAA 53869939 Query 2827 CCCCGGGCTTCAGC 2840 || ||| |||||| Sbjct 53869940 TCCTGGGTTTCAGC 53869953 >seq12 Length=91163125 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 69597625 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 69597566 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 69597565 CCGGGTTTCGGC 69597554 >seq7 Length=112638659 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 45426851 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 45426792 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 45426791 CCGGGTTTCGGC 45426780 >seq30 Length=148823899 Score = 91.5 bits (100), Expect = 5e-15 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||| | |||||||||||||||||||||| ||||||||||||||||||||||||| | | Sbjct 132028340 GCTGGAAAAGCTCAGTTGGGAGAGCATTAGCCTGAAGATCTAAAGGTCCCTGGTTCGATC 132028399 Query 2829 CCGGG 2833 ||||| Sbjct 132028400 CCGGG 132028404 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| ||||||||||| |||||||||||||||||| | |||||| Sbjct 132029735 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGTTCTAAAGGTCCCTGGTTCGATCCCGGG 132029792 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| ||||||||||| |||||||||||||||||| | |||||| Sbjct 132030978 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGTTCTAAAGGTCCCTGGTTCGATCCCGGG 132031035 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| ||||||||||| |||||||||||||||||| | |||||| Sbjct 132037218 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGTTCTAAAGGTCCCTGGTTCGATCCCGGG 132037275 Score = 84.2 bits (92), Expect = 7e-13 Identities = 62/71 (87%), Gaps = 1/71 (1%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| ||||| ||||||||||||||||||||||| | | Sbjct 132036511 GCTGAA-TAGCTCAGTTGGGAGAGCGTTAGATTGAAGATCTAAAGGTCCCTGGTTTGATC 132036569 Query 2829 CCGGGCTTCAG 2839 || || | ||| Sbjct 132036570 CCAGGTTCCAG 132036580 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||||||||||| ||| ||||||||||||||| |||||||||||| || ||| Sbjct 132037707 TAGCTCAGTTGGGAGAGGGTTACACTGAAGATCTAAAGCTCCCTGGTTCAATCCAGGG 132037764 >seq19 Length=64057457 Score = 89.7 bits (98), Expect = 2e-14 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2772 GAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCG 2831 ||| |||||||||||||||| | ||||||||||||| || ||||||||||||||| || | Sbjct 7809405 GAAATAGCTCAGTTGGGAGAACCTTAGACTGAAGATGTAGAGGTCCCTGGTTCAATCCTG 7809346 Query 2832 GGCTTCAGC 2840 || |||||| Sbjct 7809345 GGTTTCAGC 7809337 >seq13 Length=84240350 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||| |||||||||| ||||||||||||||||||||||||||||||| | Sbjct 17128537 GCTGAAATAGCTCTGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAGTC 17128596 Query 2829 CCGGGCTTCAGC 2840 || || ||| || Sbjct 17128597 CCAGGTTTCGGC 17128608 Score = 87.8 bits (96), Expect = 6e-14 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||| |||||| |||| |||||||||||||||||| |||||||| ||||| Sbjct 6810593 AAATAGCTCAGTTAGGAGAGTGTTAGGCTGAAGATCTAAAGGTCCTTGGTTCAATCCCGG 6810534 Query 2833 GCTTCAGC 2840 | |||||| Sbjct 6810533 GTTTCAGC 6810526 >seq24 Length=62714930 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 7370418 GCTGAAATAGCTCAGTTGGGAGATAATTAGGCTGAAGATCTAAAGGTCCCTGGTTCAA 7370475 >seq5 Length=121191424 Score = 80.6 bits (88), Expect = 8e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||||||||| |||||||||||| ||||||||||||||||||| || || Sbjct 54953582 AAATAGCTCAGTTGGGAGACTGTTAGACTGAAGACCTAAAGGTCCCTGGTTCAATCCTGG 54953523 Query 2833 GCTT 2836 | || Sbjct 54953522 GTTT 54953519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15849054971880