Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq3 334 9e-87 seq1 282 5e-71 seq24 170 2e-37 seq22 149 7e-31 seq16 141 1e-28 >seq3 Length=121430405 Score = 334 bits (370), Expect = 9e-87 Identities = 334/433 (77%), Gaps = 5/433 (1%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||||||||||| || | |||||||||||| || || || | | |||||| ||| Sbjct 36420348 GTGGTGACCCAGGATGTAAGAGGGCTGCTGAACACACCTGCTTCTTTAAGATGCTCTCTG 36420289 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | | | | ||||| || ||||||| || ||||| ||||||||| | | ||||| Sbjct 36420288 AAAAATCCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAA 36420229 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || | ||||| |||| ||||| || |||||||| || || ||||||||| Sbjct 36420228 AACATGATCACCTGCAGCAAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAG 36420169 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||||||||| |||||| ||||||||||| || || |||||||||||||| Sbjct 36420168 ATAAACATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTG 36420109 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || |||| ||| ||||| ||||||||||| |||||||| ||||| || ||||| || Sbjct 36420108 GAAGATGAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGA 36420049 Query 171372 GTGGCCTGCCTCACCCTCTCCGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGAT 171431 | ||||||||||| |||| |||||| || || || || |||||| | | ||| Sbjct 36420048 ATAGCCTGCCTCACTCTCT-----TTGCCCACAGTATTCCTTCACTATAAACTATCTGAA 36419994 Query 171432 GACCACCTGAACATCACCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAG 171491 || ||||| || ||||| || ||||||||||| ||||| | ||| ||| | |||||| Sbjct 36419993 GATCACCTAAATATCACTTGCTCTGCCAATGCTCGCCCAGCCCCTATGATCTCCTGGAAG 36419934 Query 171492 ATTTCGGGGTCAG 171504 | | ||||||| Sbjct 36419933 GTCTTTGGGTCAG 36419921 >seq1 Length=158337067 Score = 282 bits (312), Expect = 5e-71 Identities = 254/319 (80%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||||||||||| || | |||||||||||| || || || | | |||||| ||| Sbjct 57575924 GTGGTGACCCAGGATGTAAGAGGGCTGCTGAACACACCTGCTTCTTTAAGATGCTCTCTG 57575983 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | | | | ||||| || ||||||| || ||||| ||||||||| | | ||||| Sbjct 57575984 AAAAATCCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAA 57576043 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || | ||| | |||||||||| || |||||||| || || ||||||||| Sbjct 57576044 AACATGATCACCTACAGCGAGAACCACGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAG 57576103 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||||||||| |||||| ||||||||||| || || |||||||||||||| Sbjct 57576104 ATAAACATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTG 57576163 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || |||| ||| ||||| ||||||||||| |||||||| ||||| || ||||| || Sbjct 57576164 GAAGATGAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGA 57576223 Query 171372 GTGGCCTGCCTCACCCTCT 171390 | ||||||||||| |||| Sbjct 57576224 ATAGCCTGCCTCACTCTCT 57576242 Score = 194 bits (214), Expect = 2e-44 Identities = 217/290 (75%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || |||||||| || || || || |||||| | | ||| || ||||| || ||||| || Sbjct 57578645 GTACAGCCCACAGTATTCCTTCACTATAAACTATCTGAAGATCACCTAAATATCACTTGC 57578704 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||||||| ||||| | ||| ||| | |||||| | | ||||||| ||||| Sbjct 57578705 TCTGCCAATGCTCGCCCAGCCCCTATGATCTCCTGGAAGGTCTTTGGGTCAGGGATTGAG 57578764 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| |||| | | || || | |||||||| || ||||| ||||| | ||||| Sbjct 57578765 AACAGTACCGAGATCGTGTCACACCCCAATGGAACAACATCTGTCACCAGCATCCTCCAG 57578824 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 | ||||||||||||| ||| |||| ||||| || |||||||| ||| |||||||| Sbjct 57578825 ATCAAAGACCCCAAGACACAGGTGGGGAAGGATGTGATCTGCCAGGTGCTACACCTGGGG 57578884 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTATTTGGTTTTCAGT 171682 | ||| || ||| ||||||||||| | ||| |||| ||||||| || Sbjct 57578885 ACTGTGACCGACTACAGGGAAACTGTGAACAAAGGTAAGAGGTTTTCTGT 57578934 >seq24 Length=62714930 Score = 170 bits (188), Expect = 2e-37 Identities = 148/184 (80%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||| | || | ||| || | ||||||||||||||| | ||||||||| |||||||| Sbjct 35942877 CTTCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAA 35942818 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||||||||||| |||||||| |||||| || | |||||| | Sbjct 35942817 GGGCACACCCAGGCCCATGTCCCCCGACCGCTGGTACAACTGGCAGGACAACTCCCCATT 35942758 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161 ||||||| |||||||| ||| |||||| || || || |||||| ||||| || | Sbjct 35942757 CACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGCAGATCTGA 35942698 Query 147162 GGGG 147165 |||| Sbjct 35942697 GGGG 35942694 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| || ||||| || | || || ||||| Sbjct 35940493 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATCCCCTTCAGCTCTGTCG 35940434 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||||||| | | | || || ||||||| | ||| ||||| || ||||||| Sbjct 35940433 GAGAAGCCCAGGCCATCCAAGAAGTCTCGGGACCCATTGGCATCCCAAATTTTCACTCCC 35940374 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| ||||| ||||||| || ||||| ||| Sbjct 35940373 TTGGAAGAGAGTTCCTTAGCGTTGGTGGATCCC 35940341 >seq22 Length=61435874 Score = 149 bits (164), Expect = 7e-31 Identities = 216/304 (71%), Gaps = 6/304 (2%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||||||| || || || | ||||| | ||||| | | | |||| Sbjct 53762534 GTACTCCCTGGTGTTTGTGACCGGCCTGCTGGGCAACGTGGTGGTGGTGGTGATACTCAC 53762475 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||||||| ||||| |||||||||||||||||| |||| ||||||||||| || ||| Sbjct 53762474 AAAGTACAAGCGGCTCCGGATCATGACCAACATCTACCTGCTCAACCTGGCCATTTCTGA 53762415 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | | ||||| || || || |||||||||| | || ||||| |||| Sbjct 53762414 CGTGCTCTTCCTATTCACGCTGCCATTCTGGATTCACT--ATGTTAGGTGGAACGAGTGG 53762357 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||| | ||||| |||||||||||| | || || | || ||| |||| Sbjct 53762356 GTG----TTTGGCCACCGCATGTGTAAGTTGCTCTCCGGGCTCTATTACATGGGCTTGTA 53762301 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 ||| || || | || |||||||| ||||| | ||| |||||||||| | || |||| Sbjct 53762300 CAGTGAGATCTTTTTCATCATCCTCTTGACCATAGACCGGTATCTTGCCATCGTCCACGC 53762241 Query 8910 GGTG 8913 ||| Sbjct 53762240 CGTG 53762237 Score = 109 bits (120), Expect = 6e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| || | ||||| ||||||| |||| |||||||| Sbjct 53855757 GTACTCGGTGGTGTTTGTCATTGGCCTGGTCGGCAACATCCTGGTGGTCCTGGTCCTCAT 53855816 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | ||||||||||||| | |||||||| ||||| ||| ||||||||||| || ||| Sbjct 53855817 GCAATACAAGAGGCTCAAAAGCATGACCAGCATCTACCTCCTCAACCTGGCCATTTCTGA 53855876 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGAT 8762 ||| | | | ||||| || ||||| ||||| Sbjct 53855877 CCTTATCTTCCTCTTCACGCTGCCCTTCTGGAT 53855909 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | ||||| | ||| ||||||||| ||| |||||||| |||||||||| Sbjct 53761821 TGGACCTGGCCATGCTGGTGACAGAGGTGATCGCCTACACGCACTGCTGTGTCAACCCCG 53761762 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 | ||||| || || || || || | ||||| Sbjct 53761761 TGATCTATGCCTTCGTTGGTGAGAGGTTCC 53761732 >seq16 Length=81724687 Score = 141 bits (156), Expect = 1e-28 Identities = 130/167 (78%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| || ||||| ||||||||| |||| ||||||| Sbjct 4405085 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAAGAGGTGA 4405026 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| ||| || || ||||| ||||| || || |||| Sbjct 4405025 TGCCACAGGCTGAGAACCAC------------GGGCCTGACATCAAGGAACACGTGAACT 4404978 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| ||||| |||||||| | || |||||||||| ||| Sbjct 4404977 CACTGGGGGAGAAGCTGAAGACCCTCCGGCTGCGGCTGCGGCGCTGT 4404931 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| | |||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 4402776 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 4402717 Query 178522 TAGAAGCTTACATGACAACAAAAATG 178547 ||||| | ||||||||||| || ||| Sbjct 4402716 TAGAAACCTACATGACAACGAAGATG 4402691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583465068921600