Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq24 178 1e-39 >seq24 Length=62714930 Score = 178 bits (196), Expect = 1e-39 Identities = 136/161 (84%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||| ||||| |||||||| |||||| |||||||||| |||||||| | |||| Sbjct 35942701 GATCTGCCTCTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAAT 35942760 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||| ||||||||||| | || || || ||||| |||||||| | || ||||| ||| Sbjct 35942761 GGGGAGTTGTCCTGCCAGTTGTACCAGCGGTCGGGGGACATGGGCCTGGGTGTGCCCTTC 35942820 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||||| || ||||| |||||||| ||||||||||| || Sbjct 35942821 AACATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 35942861 Score = 178 bits (196), Expect = 1e-39 Identities = 136/161 (84%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || ||||||||||| ||||| || | ||| Sbjct 35942861 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACACCCAGGCCC 35942802 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| ||||| || || || | ||||||||||| |||||||||| | |||||||| ||| Sbjct 35942801 ATGTCCCCCGACCGCTGGTACAACTGGCAGGACAACTCCCCATTCACCACGTAGAACTGG 35942742 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| |||||| |||||||| ||||| ||||| ||||| Sbjct 35942741 CAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGCAGATC 35942701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448244783287680