Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq10 232 6e-56 seq3 210 2e-49 seq1 192 5e-44 seq24 113 4e-20 seq5 104 2e-17 >seq10 Length=104305016 Score = 232 bits (256), Expect = 6e-56 Identities = 387/555 (70%), Gaps = 11/555 (2%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| |||| ||||| || | || |||||||| || || || || || ||| Sbjct 75902119 CTAAACTGCATTGTCGCTGTGTCCCAGAACATGGGCATCGGCAAGAACGGGAACCTG--- 75902175 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCT---TCTTCCACT 2256 ||| || || | |||||||| | |||| |||| |||||| | ||||| Sbjct 75902176 --GCCACCGCTCAGGAATGAATTCCAGTATTTCCAAAGAATGACTACAGTCTCTTCAGTA 75902233 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||||| || |||||| | || ||||| ||||| || |||| || Sbjct 75902234 GAAGGTAAACAGAATGTGGTGATTATGCGTAGGAAGACCTGGTTCTCCATTCCAGAGAAG 75902293 Query 2317 AGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCA 2376 | | ||||| || ||||||| ||| | |||||||||||| | || || || || ||| Sbjct 75902294 AATTGACCTTTAAAGGACAGAATTAATATAGTTCTCAGTAGAGAACTCAAGGAACCTCCA 75902353 Query 2377 CGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCA 2436 || ||||| ||| |||| |||||| | ||| | || | ||| |||| || ||| Sbjct 75902354 AAGGGAGCTCATTTTCTTGCCAAAAGTCTGGATGATGCCTTTGAACTTATTGAAGATCCA 75902413 Query 2437 GAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAG 2496 ||||||||| | | || || | | |||||||| | || || || ||||| ||| |||| Sbjct 75902414 GAATTAAAAAATAAAGTAGACATGGTTTGGATACTGGGAGGCAGTTCTGTTTATAAGGAA 75902473 Query 2497 AGCAT-TACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAA-AAATTTG 2554 ||| ||||| | || | | || ||| | |||||||| |||| || |||| Sbjct 75902474 GCCATGAACAAG-CCAGGCCATGTTAGACTATTTGTGACAAGGATCAAGCAAGAATTTTG 75902532 Query 2555 AATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTC 2614 || ||||| | | |||||||||||| || || ||||| |||| ||| | |||| || Sbjct 75902533 AAAGTGATGCGTTTTTCCCAGAAATTGATTTTGAAAAATATAAACTTCTTCCAGAATATC 75902592 Query 2615 CAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATG 2674 | |||||||| | | || || || ||||| || |||| ||||||||||| |||||| Sbjct 75902593 CGGGTGTTCCTTTGGATGTCCAGGAGGAAAAAGGCATTAAGTACAAATTTGAAGTATATG 75902652 Query 2675 aaaaaaaaaCATAAT 2689 |||| || | |||| Sbjct 75902653 AAAAGAACAATTAAT 75902667 >seq3 Length=121430405 Score = 210 bits (232), Expect = 2e-49 Identities = 249/334 (75%), Gaps = 5/334 (1%) Strand=Plus/Minus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || || |||||| | ||||| |||||||||||| | || || |||||||||||||||| Sbjct 36420282 CCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAAAACATG 36420223 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 ||| | || || |||| |||||||| || ||||| || ||||| || || || ||| Sbjct 36420222 ATCACCTGCAGCAAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAGATAAAC 36420163 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || |||| ||||| ||| |||| || ||||||||||| || || ||||| ||| Sbjct 36420162 ATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTGGAAGAT 36420103 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 || | ||| |||||||| | ||||| || ||||| ||||| ||||| |||||||||| Sbjct 36420102 GAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGAATAGCC 36420043 Query 1515 TGTCTAACCCTTTTTGTACCATCCCGGGCTTCTATAAGCTATGAGTTATCTGAAGGAAGC 1574 || || || || |||| || | | | ||| | | |||| | ||||||||| | Sbjct 36420042 TGCCTCACTCTCTTTG--CC--CACAGTATTCCTTCA-CTATAAACTATCTGAAGATCAC 36419988 Query 1575 TTAAATGTTACGTGCTCTGCAAATGCCCGCCCAG 1608 ||||| | || |||||||| ||||| ||||||| Sbjct 36419987 CTAAATATCACTTGCTCTGCCAATGCTCGCCCAG 36419954 >seq1 Length=158337067 Score = 192 bits (212), Expect = 5e-44 Identities = 196/256 (77%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || || |||||| | ||||| |||||||||||| | || || |||||||||||||||| Sbjct 57575990 CCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAAAACATG 57576049 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 ||| | || | ||||||||||||| || ||||| || ||||| || || || ||| Sbjct 57576050 ATCACCTACAGCGAGAACCACGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAGATAAAC 57576109 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || |||| ||||| ||| |||| || ||||||||||| || || ||||| ||| Sbjct 57576110 ATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTGGAAGAT 57576169 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 || | ||| |||||||| | ||||| || ||||| ||||| ||||| |||||||||| Sbjct 57576170 GAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGAATAGCC 57576229 Query 1515 TGTCTAACCCTTTTTG 1530 || || || || |||| Sbjct 57576230 TGCCTCACTCTCTTTG 57576245 >seq24 Length=62714930 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| |||||||||||||| || || ||||||||| Sbjct 62105160 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGCGCATCGTGGCCTTCTTTGAG 62105101 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || || || ||||||||||| |||||||| | | || | |||| || |||| | Sbjct 62105100 TTCGGAGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAGC 62105041 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 62105040 ATCGCCCTGTGGATGACCGA 62105021 >seq5 Length=121191424 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 2462 TTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTA-CAAGATCTTGCAAACAG 2520 |||||||| | || || || ||||||| |||| ||| | |||| | || | | Sbjct 48414466 TTTGGATAGTGGGAGGCAGTTCTGTCTGCAAGGAATCCATAAACAAGC-CAGGCCATCTT 48414408 Query 2521 ATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATT 2580 | || ||| | |||||||| ||||| |||||||| ||||||| | || ||| ||||| Sbjct 48414407 AGACTATTTGTGACAAGGATCATGCAAGAATTTGAAAGTGATACCTTTTTTCCACAAATT 48414348 Query 2581 AATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAA 2640 || || || |||| || | |||| | |||||||||| |||| || || || Sbjct 48414347 GATTCGGAAAAGTATAAACTTCTCCCAGAATATACAGGTGTTCCTTCTGATGTCCAGGAG 48414288 Query 2641 GAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaaaaCATAAT 2689 ||||| || |||| ||||||||||| |||||||||| || | |||| Sbjct 48414287 GAAAAAGGCATTAAGTACAAATTTGAAGTATATGAAAAGAACAATTAAT 48414239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414460918285216