Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq8 118 7e-22 seq19 95.1 8e-15 seq17 95.1 8e-15 >seq8 Length=113384836 Score = 118 bits (130), Expect = 7e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||| ||||| || || ||||||||||| ||||| || Sbjct 107173936 AAGATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTTGAGCCC 107173995 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || || |||| |||| || || || || ||||| | || || || Sbjct 107173996 TCGGATACAGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 107174055 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | | | ||||| || ||| Sbjct 107174056 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 107174115 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| ||||| || | ||| |||| || || Sbjct 107174116 AACATGCAAAAGGAGTCTACTCTTCATCTAGTGTTGAG 107174153 >seq19 Length=64057457 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| |||||||| || || || || ||||| || || || || || Sbjct 33854848 AAAATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 33854789 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || || || ||||| | || || || Sbjct 33854788 AGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGAC 33854729 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||||||||| || |||||||| | |||||| | |||||| Sbjct 33854728 CAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 33854669 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || |||||||| || Sbjct 33854668 AACATCCAGAAAGAGTCGAC 33854649 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || ||||| || ||| Sbjct 33854161 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 33854102 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || ||||| | || || || || Sbjct 33854101 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 33854042 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || |||||||| | |||||| | ||||||||| Sbjct 33854041 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 33853982 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 33853981 ATCCAGAAAGAGTCGAC 33853965 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || || || ||||| || ||||| || ||| Sbjct 33854617 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 33854558 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || || || | || || || || Sbjct 33854557 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCAG 33854498 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || |||||||| | |||||| | ||||||||| Sbjct 33854497 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 33854438 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 33854437 ATCCAGAAAGAGTCGAC 33854421 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 33854389 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 33854330 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || ||||| | || || || || Sbjct 33854329 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 33854270 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || |||||||| | |||||| | ||||||||| Sbjct 33854269 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 33854210 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 33854209 ATCCAGAAAGAGTCGAC 33854193 >seq17 Length=75158596 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| |||||||| || || || || ||||| || || || || || Sbjct 55051263 AAAATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 55051322 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || || || ||||| | || || || Sbjct 55051323 AGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGAC 55051382 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || |||||||||| || |||||||||| |||||| | |||||| Sbjct 55051383 CAGCAGAGGCTCATCCTTGCCGGCAAGCAGCTGGAAGACGGCCGCACTCTTTCTGATTAC 55051442 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || |||||||| || Sbjct 55051443 AACATCCAGAAAGAGTCAAC 55051462 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || ||||| ||||| || || || || ||| Sbjct 53142511 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAGT 53142570 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || |||||||| || | || ||||| || Sbjct 53142571 GACACCATCGAGAACGTCAAGGGCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 53142630 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||| ||||| |||||||| | ||||| | || |||||| Sbjct 53142631 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 53142690 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 53142691 ATCCAGAAAGAGTCCAC 53142707 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || |||||||| || || || ||| Sbjct 53143195 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 53143254 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || |||||||| || | || ||||| || Sbjct 53143255 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 53143314 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||| ||||| |||||||| | ||||| | || |||||| Sbjct 53143315 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 53143374 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 53143375 ATCCAGAAAGAGTCCAC 53143391 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || ||||| || || || || ||| Sbjct 53142967 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 53143026 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || |||||||| || | || ||||| || Sbjct 53143027 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 53143086 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||| ||||| |||||||| | ||||| | || |||||| Sbjct 53143087 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 53143146 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 53143147 ATCCAGAAAGAGTCCAC 53143163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337996648317152