Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq24 138 9e-28 seq10 95.1 1e-14 seq7 91.5 1e-13 >seq24 Length=62714930 Score = 138 bits (152), Expect = 9e-28 Identities = 126/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 29720 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCG 29779 |||| ||| || |||||||| ||||| || | ||||||||| ||||| |||||||| || Sbjct 35942867 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACACCC 35942808 Query 29780 AGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAA 29839 || ||||||||||| |||| |||||| | |||||| || | ||| || | |||||| Sbjct 35942807 AGGCCCATGTCCCCCGACCGCTGGTACAACTGGCAGGACAACTCCCCATTCACCACGTAG 35942748 Query 29840 AACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| || | ||| ||||| || || |||||||||||| Sbjct 35942747 AACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGA 35942709 >seq10 Length=104305016 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || || ||||| |||| || | ||||| | Sbjct 75902365 ATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 75902306 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| ||||| |||| ||| |||||||| || Sbjct 75902305 TAAAGGTCAATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACGCATAATCACCACATT 75902246 Query 114382 CTGCTTACCT 114391 ||| |||||| Sbjct 75902245 CTGTTTACCT 75902236 >seq7 Length=112638659 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| ||| | ||||| | | ||||| |||||| || || Sbjct 83037275 TTGAGTTCTCTACTGAGAACTATGTTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 83037334 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| |||||||| ||||||| ||||| |||||| Sbjct 83037335 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 83037382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406147636841584