Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq30 132 7e-26 seq15 132 7e-26 seq13 105 9e-18 seq14 87.8 2e-12 seq26 86.0 9e-12 seq11 86.0 9e-12 >seq30 Length=148823899 Score = 132 bits (146), Expect = 7e-26 Identities = 247/356 (69%), Gaps = 19/356 (5%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||| | | |||||||| |||||| | ||| |||||| Sbjct 142679615 TCCAGTGGAACCAAAGCCTCCTGAAC--CCCTTTCAGTGTCATCTAAAACTTGAACTTCC 142679558 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || || ||| |||| |||| | || || || || ||| ||||||| | || Sbjct 142679557 TCTATTTCTGGGTAAGATATCCGTTCACGAATGAGCTGTGCAATTTGATCACCCTTTTTG 142679498 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | ||| | || |||| | |||||||||||| Sbjct 142679497 ACTTCAAACTTCTCTTTGCCAAGATTAAACAGGACAACACCAACATTTCCTCTATAATCT 142679438 Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110 ||||||||||| || |||| ||||| || |||| | || ||||| | |||| Sbjct 142679437 TCATCTATTACACCAGCTCCTACATCTTTGAAGTGTTTTGCTGCCAAGCCAGAACGAGGA 142679378 Query 46111 GCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAA 46166 || | ||||||||| ||||| || | | ||| |||| || ||||| | ||| Sbjct 142679377 GCCACTCTTCCATAGCACCCAGAA----GGAACGGCTATCTGAATGTCAGTTTTCA-CAA 142679323 Query 46167 TCTCCTTTCTCCA--GGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCC 46220 | ||||||||| || || | || || || || |||||||| | ||||| || Sbjct 142679322 GC-ACTTTCTCCATCGGTGGTACTGTGTAATCATAGGCACTGTACAGGTCATAGCC 142679268 Score = 86.0 bits (94), Expect = 9e-12 Identities = 141/202 (70%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTT 45935 ||||||||| ||||| ||| | || |||||||| ||||| | ||| || |||| Sbjct 108442660 TCCAGTGGAACCAAAACCTCCTGAATCCCTTTCAGTGTTATCTAAAACTTGAACATCCTC 108442601 Query 45936 CAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTTAT 45995 | ||||||||| |||| || | | | || || || || ||||||| | || | Sbjct 108442600 TATTTCAGGATAAAATATCTATTCACAAAG-AGCTGTGCAGTTTGATCACCCTTTTTGAC 108442542 Query 45996 TTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCTTC 46055 |||||| | ||||| ||| ||| || | || ||||| | ||||| |||||||| Sbjct 108442541 TTCAAACCTTTCTTTGCCAAAATTACATAGTACAACACCAATGCTTCCTCTGTAATCTTC 108442482 Query 46056 ATCTATTACTCCCCCTCCCACA 46077 |||||| || || |||||||| Sbjct 108442481 ATCTATGACACCAGCTCCCACA 108442460 >seq15 Length=85296676 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 51806379 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 51806438 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| |||||||| || |||||||| |||||||| ||||| || || | | |||||| Sbjct 51806439 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 51806498 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 51806499 TTTCTTACACCAT 51806511 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 51826586 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 51826645 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||||||||||| | || || || || ||||| || || | ||| | ||||||| Sbjct 51826646 TAGGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 51826705 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 || || || ||||||||| || Sbjct 51826706 ATGTGTTGTGGTCTTTCAGCC 51826726 Score = 86.0 bits (94), Expect = 9e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974 ||||||| |||||||| |||||||| || ||||||| ||||| ||||||||||| || Sbjct 51817022 ATATAGCTTCTCAAATTCTTCTCCCCAGACCTCATCCAGACCAGGACATTCATTTGGACA 51817081 Query 77975 CATCAATGACCAGTC 77989 |||||| |||||||| Sbjct 51817082 CATCAAAGACCAGTC 51817096 >seq13 Length=84240350 Score = 105 bits (116), Expect = 9e-18 Identities = 179/257 (70%), Gaps = 12/257 (5%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||| | | |||||||| |||||| | ||| |||||| Sbjct 34103538 TCCAGTGGAACCAAAGCCTCTTGAAC--CCCTTTCAGTGTCATCTAAAACTTGAACTTCC 34103481 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || || ||| |||| |||| | | || || || || |||| | | | || Sbjct 34103480 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCAAAC-----TTTTG 34103426 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | ||| | || |||| |||||||||||||| Sbjct 34103425 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTCCCTCTATAATCT 34103366 Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||||| || || |||| ||||| || || | | || ||||| | |||| Sbjct 34103365 TCATCTATGACACCAGCTCCTACATCTATGAAGGGTTCTGCTGCCAAGCCAGAACGAGGA 34103306 Query 46111 GCTATTCTTCCATAACA 46127 || | ||||||||| || Sbjct 34103305 GCCACTCTTCCATAGCA 34103289 >seq14 Length=84648390 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697 ||| ||||| |||||||| || ||||||| ||| ||||||||||| ||||| || ||| Sbjct 64326166 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGG 64326107 Query 48698 GTATTGGATTGGGAAAATAACAAATC 48723 ||| |||||||| || || ||||||| Sbjct 64326106 GTACTGGATTGGAAAGATGACAAATC 64326081 >seq26 Length=51681464 Score = 86.0 bits (94), Expect = 9e-12 Identities = 116/161 (72%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 45904 CTTTCAGTACCATCTAGAGATTGCACTTCCTTCAGATCAGGATAATATATACGTTGATAG 45963 |||||||| |||||| || ||| ||| ||| | || |||| | |||| | || | | Sbjct 40977654 CTTTCAGTGTCATCTAAAGCTTGAACTACCTCAATTTCTGGATGAAATATCCATTCAGAA 40977595 Query 45964 ATTAGTTGAGCTATTCTATCACCCGTATTTATTTCAAATATATCTTTTCCATTATTGATC 46023 || ||||| || |||| ||||||| | || | |||||| | ||||| ||| ||| | | Sbjct 40977594 ATAAGTTGTGCAATTCAATCACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAAC 40977535 Query 46024 AGAATGACTCCAATTGTCCCTCTATAATCTTCATCTATTAC 46064 |||| | |||| ||||||||||||||||||| || Sbjct 40977534 AGAACAGCACCAACAT---CTCTATAATCTTCATCTATGAC 40977497 >seq11 Length=107310763 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||| || || || | ||||| || || ||||| || || Sbjct 87468490 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 87468549 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||| ||| |||||||||||||| ||||||||||| Sbjct 87468550 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATT 87468584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694641499516160