Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq15 136 6e-27 seq14 111 2e-19 seq30 91.5 2e-13 seq11 86.0 9e-12 >seq15 Length=85296676 Score = 136 bits (150), Expect = 6e-27 Identities = 110/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 51806379 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 51806438 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| |||||||| || ||||||||||||||||| ||||| || || | | |||||| Sbjct 51806439 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 51806498 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 51806499 TTTCTTACACCAT 51806511 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || |||| ||| || ||||| ||||| | || || ||||| || || || || || || Sbjct 51830887 CTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGATG 51830946 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| | || || || |||||||| | | Sbjct 51830947 GCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCAGT 51831006 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCAT 77502 || | |||||| || || | |||| ||||| || || ||||| Sbjct 51831007 TCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACCTTCAT 51831050 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| |||||||| || ||||||| ||||||||||||||| ||||||||||| ||| Sbjct 51817032 TCAAATTCTTCTCCCCAGACCTCATCCAGACCAGGACATTCATTTGGACACATCAAAGAC 51817091 Query 76580 CACTC 76584 || || Sbjct 51817092 CAGTC 51817096 >seq14 Length=84648390 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | || || ||||| ||||| |||||||| ||||| | || | Sbjct 64335763 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 64335704 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 64335703 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGG 64335644 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||||| || Sbjct 64335643 CCACCACCCTCTCCCC 64335628 Score = 87.8 bits (96), Expect = 3e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||| ||||||||||| ||||| || ||| | Sbjct 64326166 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGG 64326107 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 || ||||| ||||| || ||||||| Sbjct 64326106 GTACTGGATTGGAAAGATGACAAATC 64326081 >seq30 Length=148823899 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 44402 ATCTAGAGATTGTACTTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGC 44461 ||||| | ||| |||||||||| || || ||| |||| |||| | || || || || Sbjct 142679576 ATCTAAAACTTGAACTTCCTCTATTTCTGGGTAAGATATCCGTTCACGAATGAGCTGTGC 142679517 Query 44462 TATTCTATCACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCC 44521 ||| |||||| | || | || ||| | ||||| ||| ||| | || | || || Sbjct 142679516 AATTTGATCACCCTTTTTGACTTCAAACTTCTCTTTGCCAAGATTAAACAGGACAACACC 142679457 Query 44522 AATGTTCCCCCTATAATCTTCATCTATTACTCCACCTCCCACATC 44566 || || || |||||||||||||||||||| ||| |||| ||||| Sbjct 142679456 AACATTTCCTCTATAATCTTCATCTATTACACCAGCTCCTACATC 142679412 >seq11 Length=107310763 Score = 86.0 bits (94), Expect = 9e-12 Identities = 102/138 (74%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTTT 46340 ||| |||||| |||| || | ||| ||| ||| | |||||| |||||||| | Sbjct 87468447 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTGTCGGACTTGACATCACTCCCATCCT 87468506 Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 || || || ||||| | ||||| || || ||||| || || |||| ||| |||||||| Sbjct 87468507 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 87468566 Query 46401 CATAAAATCAAACGGATT 46418 |||||| ||||| ||||| Sbjct 87468567 CATAAAGTCAAATGGATT 87468584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712906381678080