Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq25 322 5e-83 seq16 322 5e-83 seq8 266 3e-66 seq14 107 2e-18 seq11 93.3 4e-14 seq30 84.2 2e-11 seq17 82.4 8e-11 >seq25 Length=42904170 Score = 322 bits (356), Expect = 5e-83 Identities = 231/265 (87%), Gaps = 1/265 (0%) Strand=Plus/Minus Query 8352 TGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGG 8411 || ||||||||| |||||||||||| ||||| |||||||||||||||| |||||| | Sbjct 17730259 TGCTGCCCAGGCAGGAGTGCAGTGGTACAATCTCAGCTCACTGCAACCTCCACCTCCCAG 17730200 Query 8412 GTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACC 8471 |||||||| |||||||||||||||||||| ||||||||| |||||||| |||||| Sbjct 17730199 GTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGAATTACAGGTGTGCGCCACC 17730140 Query 8472 ACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTG 8531 | ||| ||||||||| |||||||||||||||| ||||||||| |||||||| ||||||| Sbjct 17730139 AGGCCTGGCTAATTTT-GTATTTTTAGTAGAGACAGGGTTTCATCATGTTGGTCAGGCTG 17730081 Query 8532 GTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTA 8591 ||||| |||||||||||||| |||| ||| |||||| ||||||||||||||||||||||| Sbjct 17730080 GTCTCAAACTCCTGACCTCAAGTGAACCATCTGCCTTGGCCTCCCAAAGTGCTGGGATTA 17730021 Query 8592 CAGGCATGAGCCACCGCGCCTGGCC 8616 |||| ||||||||| || || |||| Sbjct 17730020 CAGGTATGAGCCACTGCTCCCGGCC 17729996 Score = 168 bits (186), Expect = 7e-37 Identities = 120/136 (88%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 8483 ATTTTTGTATTTTT--AGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAAC 8540 |||||||||||||| |||||||| |||||||||| |||| |||||| ||||||||| | Sbjct 17730837 ATTTTTGTATTTTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATC 17730896 Query 8541 TCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGA 8600 |||||||||| |||||| || | ||||||||||||||||||||||||||||||| ||| Sbjct 17730897 TCCTGACCTC--GTGATCTGCCCGTCTCGGCCTCCCAAAGTGCTGGGATTACAGGCTTGA 17730954 Query 8601 GCCACCGCGCCTGGCC 8616 ||||||||||| |||| Sbjct 17730955 GCCACCGCGCCCGGCC 17730970 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/118 (75%), Gaps = 11/118 (9%) Strand=Plus/Minus Query 8499 TAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATC 8558 |||||| || || | |||||||| ||||||||||||| |||||||| |||| | Sbjct 17730409 TAGAGATAGAGTCTTGCCATGTTGCCCAGGCTGGTCTCAAACTCCTGGGCTCAAG----- 17730355 Query 8559 CACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 ||| ||||||| |||||||||||||||| || |||||| |||||||||| Sbjct 17730354 ------CCTTGGCCTCCAAAAGTGCTGGGATTACGGGTGACAGCCACTGCGCCTGGCC 17730303 >seq16 Length=81724687 Score = 322 bits (356), Expect = 5e-83 Identities = 232/268 (87%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408 |||||| |||||| ||||||||| |||| ||||||| |||||||||||||||| ||||| Sbjct 34309537 CTCTGTCACCCAGGTTGGAGTGCAATGGCGTGATCTCGGCTCACTGCAACCTCCACCTCC 34309596 Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCC 8468 ||||||||| |||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 34309597 TGGGTTCAAGGGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGCCTGCC 34309656 Query 8469 ACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGG 8528 || | | |||||||||||||||||||||||| || |||||||||||||||| ||||| Sbjct 34309657 ACTATACACAGCTAATTTTTGTATTTTTAGTAGGGACGGGGTTTCACCATGTTGCCCAGG 34309716 Query 8529 CTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGA 8588 | | |||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 34309717 CCGATCTCAAACTCCTGACCTCAGGTGATGCACCTGCCTCGGCCTCCCAAAGTGCTGGGA 34309776 Query 8589 TTACAGGCATGAGCCACCGCGCCTGGCC 8616 |||||| | |||||||| | || |||| Sbjct 34309777 TTACAGCCGTGAGCCACTGGACCCGGCC 34309804 Score = 82.4 bits (90), Expect = 8e-11 Identities = 100/135 (74%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 8484 TTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCC 8543 ||||| | ||||| | | | |||| | || || ||| |||||||| ||| |||| || Sbjct 34308959 TTTTTTTTTTTTTTTCAAAAATGGGGTCTTACTATATTGCCCAGGCTGATCTTGAACCCC 34309018 Query 8544 TGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCC 8603 || |||| | ||| | ||||| ||||| ||||||||||||||||| ||||| |||| Sbjct 34309019 TGGGCTCAAGCAGTCCTCTTGCCTTGGCCTTCCAAAGTGCTGGGATTATAGGCACAAGCC 34309078 Query 8604 ACCGCGCCTGGCCCT 8618 | | | |||| ||| Sbjct 34309079 CCTGTG-CTGGACCT 34309092 >seq8 Length=113384836 Score = 266 bits (294), Expect = 3e-66 Identities = 196/227 (86%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 8395 CAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCA-GCCTCCAGAGTAGCTGGGA 8453 ||||||||||||||| |||||||| |||||||| ||||| |||||| |||||||||||| Sbjct 112084292 CAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCTACCTCATGCCTCCCGAGTAGCTGGGA 112084351 Query 8454 TTACAGGCAAAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTC 8513 ||||||||| |||| | ||| |||||||||||||||||||||||||| || ||||| Sbjct 112084352 TTACAGGCATGCACCACTATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGAGTTTC 112084411 Query 8514 ACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCT 8573 |||||||| |||||| ||||| |||||||||||||| ||||| | ||||||||||||| Sbjct 112084412 TTCATGTTGGTCAGGCTAGTCTCAAACTCCTGACCTCAGGTGATTCGCCTGCCTCGGCCT 112084471 Query 8574 CCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCCCTTT 8620 |||||||||||||||||||||| |||||||| | || ||||| || Sbjct 112084472 CCCAAAGTGCTGGGATTACAGGTGTGAGCCACTACACCCGGCCCATT 112084518 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446 || ||||||| || |||| | | |||||| || |||| |||||||||||| ||||| Sbjct 100352541 GCGCACTGCAGCCCAGAACTCCTGAGCTCAAGCGATCCTCCAGCCTCAGCCTCCCGAGTA 100352600 Query 8447 GCTGGGATTACAGGCAAAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGA 8502 ||||||| ||||||| |||||| |||| ||| | |||||| ||| | |||| Sbjct 100352601 GCTGGGACTACAGGCGCGCGCCACCGCGCCCGGCTGAATTTTGTTTTTAAATTAGA 100352656 >seq14 Length=84648390 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || || || | ||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 64335763 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 64335704 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||| ||||| |||||||| ||||| || |||||||| || || ||||| ||||||| Sbjct 64335703 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGG 64335644 Query 23651 CCAC 23654 |||| Sbjct 64335643 CCAC 64335640 >seq11 Length=107310763 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 || || || ||||| | |||||| ||||| || | || ||||| | ||||||||| || Sbjct 87470290 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 87470349 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||| | ||||| || ||||||||||| || || || || || |||||||| Sbjct 87470350 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 87470409 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 87470410 ACCACACGT 87470418 >seq30 Length=148823899 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 8537 GAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGC 8596 |||||||||| |||| ||||||| || ||||| ||||||| | ||||||||||||||| Sbjct 17862449 GAACTCCTGAGCTCAAGTGATCCTCCAGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGC 17862508 Query 8597 ATGAGCCACCGCGCCTGGC 8615 | |||||||||||||| Sbjct 17862509 GCGCACCACCGCGCCTGGC 17862527 >seq17 Length=75158596 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/86 (83%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 8406 TCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAA 8465 || |||| |||||| ||||||| |||||||||||| |||||||||||| |||||| | Sbjct 65369350 TCGCGGGCTCAAGCCATTCTCCAGCCTCAGCCTCC-GAGTAGCTGGGACTACAGGTGCAC 65369292 Query 8466 GCCACCACGCCAAGCTAA--TTTTTG 8489 |||||| ||| |||||| |||||| Sbjct 65369291 GCCACCGAGCCCAGCTAAGCTTTTTG 65369266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521467505521600