Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq16 174 2e-38 seq11 96.9 5e-15 >seq16 Length=81724687 Score = 174 bits (192), Expect = 2e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| ||||| || | |||||||||||| |||||||| || ||||| ||||| Sbjct 69267135 GTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAGCACATCACACACT 69267194 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||||||||||| ||||| || ||||| |||||||| || ||||| ||||| ||||| Sbjct 69267195 CTGTTGTGTTCCCGTAGCCAAATGGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 69267254 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 | || || || ||||| | || || ||| || || | || || |||||||| | Sbjct 69267255 ACTTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAACATGAGGCGGGTAGATCATTTCG 69267314 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| |||||||| | ||| |||||||| || || | |||||||| Sbjct 69267315 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATTAATCATCT 69267363 Score = 152 bits (168), Expect = 7e-32 Identities = 216/304 (71%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||| | || || ||||| || || ||||| || |||| ||||||||||| | Sbjct 69265450 GAACACTGAATGAGGTAAAGGGACAGCCTTTCACGTTACTGCAGATGAGAGACTGAATTG 69265509 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | |||| ||| || || || ||||| ||||| ||||| |||||||||||| Sbjct 69265510 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCGAAAGTGCTAGGCTTCCAGTACT 69265569 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | || ||||| || || |||| || ||||| |||||||| || || || || | Sbjct 69265570 CGGGAGAGCATATAGGATTACCCATAAGTCCTTTCAGGGAGAATGGTGCTCCAGCTTCTA 69265629 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||| |||| || |||||||||| ||||||||||| || |||| | ||| || | Sbjct 69265630 CCATGGTCTCCCCAAAGATGGCGTCTGGACGGGGCTTCTCTACCAGAAGGGCGGGATAAA 69265689 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 ||||| || || | |||||| || || || | || ||||| || ||||| |||| Sbjct 69265690 ACTCCATGGCATCTATGTCTCCATAGAGCGCTTCTAACTCTGCAGCCATTTCCTTCTCTC 69265749 Query 8583 CTGT 8586 |||| Sbjct 69265750 CTGT 69265753 Score = 107 bits (118), Expect = 3e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 ||| |||||||| | ||| |||||||| || || ||||| | ||||| ||| | || Sbjct 69268150 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 69268209 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||| || || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 69268210 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAGATTTGTGCCCTGGGGATC 69268269 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 ||| |||| | || | ||||| ||||| |||||| Sbjct 69268270 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAAC 69268308 >seq11 Length=107310763 Score = 96.9 bits (106), Expect = 5e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| || | |||||||| || |||||||| | ||| || || Sbjct 93231932 TCACCGATGAGGATGAGGCGGGCCGTCTGGAAGAGCTGCTCGTCGCCCCAGGTCGGGTGC 93231873 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | || ||||| | |||||| || | ||||| || |||||||| | | Sbjct 93231872 TCAGCCTTCAGCAGGTCACACACGCGGTTGTGCTCACGCAGCCATATCGTGGCGTAGACC 93231813 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||||||||||| | ||| ||||| |||| || || || |||| Sbjct 93231812 ATGAGCCCAGGAAGCAGCCCAAACACCTCCTGGCCCACGGCCA 93231770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716848626741760