Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq19 163 7e-35 seq17 159 8e-34 seq8 140 8e-28 seq3 127 5e-24 >seq19 Length=64057457 Score = 163 bits (180), Expect = 7e-35 Identities = 171/222 (77%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || ||||||||||| || || || || || |||||||| |||| Sbjct 33854853 AGGTCAAAATGC---AGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGG 33854797 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| |||||||||||||||| || ||||| ||||| || ||||| || Sbjct 33854796 TGGA--GCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 33854739 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || |||||||| | || ||||| ||||| || ||||| |||||||| | ||||| Sbjct 33854738 TCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCT 33854679 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | ||||| ||| |||| ||||| || || ||||| || || Sbjct 33854678 TTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGT 33854637 Score = 154 bits (170), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 33854386 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 33854329 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| || || || ||||||| Sbjct 33854328 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGC 33854269 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | |||||| | ||||| ||| Sbjct 33854268 AGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 33854209 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 33854208 TCCAGAAAGAGTCGACCCTGCACCTGGT 33854181 Score = 149 bits (164), Expect = 2e-30 Identities = 159/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| || ||||| || ||| Sbjct 33854158 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGA--GCCCAGTG 33854101 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| || || || ||||||| Sbjct 33854100 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGC 33854041 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | |||||| | ||||| ||| Sbjct 33854040 AGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 33853981 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 33853980 TCCAGAAAGAGTCGACCCTGCACCTGGT 33853953 Score = 149 bits (164), Expect = 2e-30 Identities = 159/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||||||||| || || || || || || |||||||| || ||||| || ||| Sbjct 33854614 CAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGA--GCCCAGTG 33854557 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || || || || || || ||||||| Sbjct 33854556 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCAGC 33854497 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | |||||| | ||||| ||| Sbjct 33854496 AGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 33854437 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 33854436 TCCAGAAAGAGTCGACCCTGCACCTGGT 33854409 >seq17 Length=75158596 Score = 159 bits (176), Expect = 8e-34 Identities = 170/222 (77%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || ||||||||||| || || || || || |||||||| |||| Sbjct 55051258 AGGTCAAAATGC---AGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGG 55051314 Query 177970 TGGAAAGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 ||| ||| || ||||||||||||||||| || ||||| ||||| || ||||| || Sbjct 55051315 TGG--AGCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 55051372 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || |||||||| | || ||| | ||||| || ||||| ||||| || | ||||| Sbjct 55051373 TCCCCCTGACCAGCAGAGGCTCATCCTTGCCGGCAAGCAGCTGGAAGACGGCCGCACTCT 55051432 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | ||||| ||| |||| ||||| ||||| ||||| || || Sbjct 55051433 TTCTGATTACAACATCCAGAAAGAGTCAACCCTGCACCTGGT 55051474 Score = 154 bits (170), Expect = 4e-32 Identities = 168/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || ||||| |||||||| |||||||| || ||| Sbjct 53142514 CAGATCTTCGTGAAGACCTTGACCGGCAAAACCATCACCCTGGAGGTGGA--GCCCAGTG 53142571 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 53142572 ACACCATCGAGAACGTCAAGGGCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 53142631 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 53142632 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 53142691 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || | | |||||| Sbjct 53142692 TCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 53142732 Score = 150 bits (166), Expect = 4e-31 Identities = 167/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 53142970 CAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 53143027 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 53143028 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 53143087 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 53143088 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 53143147 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || | | |||||| Sbjct 53143148 TCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 53143188 Score = 145 bits (160), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 53142742 CAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 53142799 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 53142800 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 53142859 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 53142860 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 53142919 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || | | |||||| Sbjct 53142920 TCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 53142960 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || ||||| || |||||||| || ||| Sbjct 53143198 CAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACTCTGGAGGTGGA--GCCCAGTG 53143255 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 53143256 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 53143315 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 53143316 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 53143375 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 53143376 TCCAGAAAGAGTCCACTCTGCACCTGGT 53143403 >seq8 Length=113384836 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || || || ||||| |||||||| || ||| || Sbjct 107173942 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTTGAGCCCTCGGAT 107174001 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || || || || ||||| ||||| || |||||||| ||||| ||||||||| Sbjct 107174002 ACAGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAA 107174061 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| | ||| | | || || ||| | Sbjct 107174062 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAACATG 107174121 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||||| || |||||||| Sbjct 107174122 CAAAAGGAGTCTACTCTTCATCTAGTGTTGAGACT 107174156 >seq3 Length=121430405 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| ||||| | ||| || | ||||| |||||||| || |||||| Sbjct 20116183 CAGATTTTCGTGAAGACTCTGATAGGGAACATCATCACTCTCGAGGTCGAGCCCTCAGAT 20116242 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||| | || ||| |||| ||||| ||||||||| Sbjct 20116243 ACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAAGAATTCCTCCTGACCAGCAA 20116302 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || |||||||| ||| | | || || ||| | Sbjct 20116303 AGACTGATCTTTGCTGGCAAGCAACTGAAAGATGGACATACTTTGTCTGACTACAACATT 20116362 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||||| || | |||||| Sbjct 20116363 CAAAAGGAGTCCACTCTTCATCTAGTGTGGAGACT 20116397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203682710697936