Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq350759 86.0 5e-12 >seq350759 Length=3492976 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| || || ||||| ||| | | || ||||| ||||| | || || || | ||| Sbjct 2680807 ATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAATGGGGAGCTGTCC 2680866 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 ||||| | |||||| | ||||| || |||||||| || || || ||||||||||| | Sbjct 2680867 TGCCAGTTGTACCAGCGGTCGGGAGACATGGGCCTGGGTGTGCCCTTCAACATTGCCAGC 2680926 Query 19092 TATGCACTTCTTACCTACAT 19111 || || || || |||||||| Sbjct 2680927 TACGCCCTGCTCACCTACAT 2680946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397717176287235