Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq348463 410 9e-110 seq349641 279 4e-70 seq350122 228 6e-55 seq349691 150 1e-31 seq350074 120 2e-22 seq350759 82.4 5e-11 >seq348463 Length=257100 Score = 410 bits (454), Expect = 9e-110 Identities = 350/432 (81%), Gaps = 0/432 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||||||||||||||||| | ||| || || || |||| Sbjct 8320 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGAACAT 8379 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 || |||||| |||||||||| | |||||| ||||| || | ||||| |||||| | Sbjct 8380 CCAAAGGAACACCTGGATATTCTGGAAGAAGTTTATATTTTTCAAAATCAATTTCTGGGA 8439 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 |||| || |||| |||||| |||||||||||||| |||||||| ||| ||| || || || Sbjct 8440 AAAACGTATCACTTTCAAATTCTTGCATGATCCTTGTCACAAATAGTCTAACATGGCCTG 8499 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | |||| ||||| ||||| |||||||| ||||| | |||||| |||| |||||||| Sbjct 8500 GTTTGTTCATGGCTTCCTTATAAACAGAACTGCCTCCCACTATCCAAACCACGTCTACTT 8559 Query 4208 TATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAA 4267 |||||| ||||||||| | ||| |||||| ||| |||||||| | ||| || || | || Sbjct 8560 TATTTGTTAATTCTGGATCTTCAATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAA 8619 Query 4268 AATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTT 4327 ||||||||| | |||| | ||||| ||||| | |||||||| | |||||||||| | | Sbjct 8620 AATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCT 8679 Query 4328 TTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAAT 4387 ||||||| || |||||||| ||||| |||||||| ||||| || |||||||||| |||| Sbjct 8680 TTAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTAACCATAATCACCAAAT 8739 Query 4388 TCTGTTTATCTG 4399 |||||||| ||| Sbjct 8740 TCTGTTTACCTG 8751 >seq349641 Length=707552 Score = 279 bits (308), Expect = 4e-70 Identities = 315/419 (75%), Gaps = 6/419 (1%) Strand=Plus/Plus Query 3979 TTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACA 4038 || || |||||||||||||| ||||||| |||||| || || ||| ||| ||||| Sbjct 194095 TTTTCTTATACTTCAAATTTATACTTAACGACTTTCTCCTCCTGGACA---GAAGGAACA 194151 Query 4039 CTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCA 4098 | ||| |||||| | |||||| || || | | |||| |||| ||||||| | ||| Sbjct 194152 CCTGGGTATTCTGGGAGAAGTTTATAATTTCCCAAATCATTTTCTAGAAAAAATGCATCA 194211 Query 4099 CATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATA 4158 | |||||| ||||| |||| | | |||||| | | |||||| || ||| | |||| Sbjct 194212 CTTTCAAATTCTTGTGTGATTATTGCCACAAATAATCTAAGATGGCCTGGCTTGTTCATG 194271 Query 4159 GCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAAT 4218 ||||| ||||| | ||||| | ||| |||| | |||||||||| |||||||| |||| Sbjct 194272 GCTTCCTTATATA--GAACTGCTTCCTGCTATCAA-ACCATGTCTAGTTTATTTGTTAAT 194328 Query 4219 TCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTA 4278 |||| || ||| |||||| ||| |||||||| | ||| || || | ||||||||||| Sbjct 194329 GCTGGTTGCTCGATAAGTTCTAAGGCATCATCCAGACTTTTTGCAAGAAAATGAGCTCCC 194388 Query 4279 TGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGG 4338 ||| || | ||||| ||||| | |||||| | ||||||||| ||||||||| || Sbjct 194389 TGTAGAGGTTCCTTGAGTTCTCTATTGAGAATTATGTTAATTCTGTCTTTTAAAGATCGA 194448 Query 4339 TTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATC 4397 || || || ||||| |||||| |||| ||||||||||||| |||||||||||||| Sbjct 194449 TTTTTTTCTGGAATGTTGAACCACATCTTCCTACCCATAATCACCAAATTCTGTTTATC 194507 >seq350122 Length=1380883 Score = 228 bits (252), Expect = 6e-55 Identities = 197/244 (81%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||||||||||||||||| | ||| || || || |||| Sbjct 530951 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 530892 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 |||| |||||| |||||||||| | |||||| || || || ||||| |||||||| Sbjct 530891 CAGAAGGAACACCTGGATATTCTGGGAGAAGTTTATACTTTTCCGAATCAATTTCTGGAA 530832 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 |||| || |||| |||||| |||||||||||||| |||||||| ||| |||||| || || Sbjct 530831 AAAATGTATCACTTTCAAATTCTTGCATGATCCTTGTCACAAATAGTCTAAGATGGCCTG 530772 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | | || | ||| || | |||||||| ||||| | |||||| ||||||||||||| Sbjct 530771 GCTTGTTTATGGATTCCTTGCAGACAGAACTGCCTCCCACTATCCAAACCATGTCTACTT 530712 Query 4208 TATT 4211 |||| Sbjct 530711 TATT 530708 >seq349691 Length=2254845 Score = 150 bits (166), Expect = 1e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 26952 ACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAA 27011 |||||||| || || || |||||||| || | ||| ||||||||||| |||| || || Sbjct 1528621 ACAATGGGGGTGACACAGGTGCAGCCCACGGCCACCAGCATCTTCTCCAGCCGGAAGGAG 1528562 Query 27012 TTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAG 27071 | ||||||| | ||| | | | || | || || |||||||| ||||| | ||| ||| Sbjct 1528561 TGAGGGCAGTGCTGAGACTCCCTTCGAAGGACCAGGATCTCTTGCTGGATGGTGACAGAG 1528502 Query 27072 TTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCT 27131 |||||||| | || || ||||| |||||||| | ||| || ||| || ||||| || Sbjct 1528501 TTCATGTGATGGTTCACCTTCCCTTCAGCATTGATACAGCCCGAGTGGCTGCACTTGGCC 1528442 Query 27132 TCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 ||||| ||||||||||| || || || | || |||||||| Sbjct 1528441 TCCCAGATCACAGAGGGGTACCTCTCAGGGTCCTCATTGCG 1528401 >seq350074 Length=3010838 Score = 120 bits (132), Expect = 2e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| |||| |||||||||||||| ||||||||| Sbjct 1916928 TTATAAACAGAACTGCCTCCCACTATCCAAACCACGTCTACTTTATTTGTTAATTCTGGA 1916987 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 | ||| |||||| ||| |||||||| | ||| || || | ||||||||||| | |||| Sbjct 1916988 TCTTCAATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTTTGGA 1917047 Query 4285 AGCTCC 4290 | ||| Sbjct 1917048 GGTTCC 1917053 Score = 116 bits (128), Expect = 3e-21 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| |||||||| || |||||||| || Sbjct 1920417 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTTCTTTAAAGGTCGATTCTTCTCTGG 1920476 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| ||||||||||||| |||||||||||| || Sbjct 1920477 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 1920525 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||| || | ||||| |||||| ||||| || |||| |||||| |||||||| Sbjct 1914569 AAGTTTATATTTTTCAAAATCAATTTCTGGGAAAAACGTATCACTTTCAAATTCTTGCAT 1914628 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| ||| ||| || || ||| | |||| ||||| || | | ||| Sbjct 1914629 GATCCTTGTCACAAATAGTCTAACATGGCCTGGCTTGTTCATGGCTTCCTTTGAAATAGA 1914688 Query 4176 AC 4177 || Sbjct 1914689 AC 1914690 Score = 82.4 bits (90), Expect = 5e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||||||||||||||||| | ||| || || || |||| Sbjct 1910350 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 1910409 Query 4028 TAGAAAGAACACTTGGATAT 4047 || |||||| ||||||| Sbjct 1910410 CCAAAGGAACACCTGGATAT 1910429 >seq350759 Length=3492976 Score = 82.4 bits (90), Expect = 5e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||| || || |||||||||||||| || ||||| || || || | ||| |||| Sbjct 2678602 CTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCTAAATCCCCTT 2678543 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 || ||||||| | || || || ||| || || || || || || |||||||||| Sbjct 2678542 CAGCTCTGTCGGAGAAGCCCAGGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAA 2678483 Query 102153 TGTGCACGCC 102162 | | ||| || Sbjct 2678482 TTTTCACTCC 2678473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359635465963733