Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq349686 414 1e-110 seq348299 132 6e-26 seq350466 123 3e-23 seq348784 102 1e-16 >seq349686 Length=1138722 Score = 414 bits (458), Expect = 1e-110 Identities = 626/890 (70%), Gaps = 3/890 (0%) Strand=Plus/Plus Query 23829 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 23888 ||||| |||||||| | || || ||||| || | || || || || ||||| || || Sbjct 730141 GACATCACTCCCATCCTCTGATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 730200 Query 23889 TCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAAT 23948 || | ||| ||||||||||| || || ||||||| || | | | | |||| Sbjct 730201 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAG 730260 Query 23949 CCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAA 24008 |||| || || | ||||||||| || |||| || || ||||||| ||| Sbjct 730261 CCCAGCTCCAGCATAAGTCTATCTGCCACGCACTCAATGTACTGCTTCATCAAAGTGCAA 730320 Query 24009 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 24068 ||||| || || || || || || || ||| | || || || || ||||| || || Sbjct 730321 TTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACT 730380 Query 24069 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 24128 || | | || || | ||||| | | ||| | | | ||| | ||||| ||| Sbjct 730381 GCATTGATGATTATTTCTTTTACTCTCTGTTCTGAAGATTTGTGCAACAGGTGTTTGAAC 730440 Query 24129 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188 |||| || || || || || || | ||||||||||| ||||| | ||| ||||||||| Sbjct 730441 ATCAGGCAGGCAAAGTCACAATGCAAGCCCTCGTCTCTGCTAATAAGTTCATTGGAAAAC 730500 Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 24248 ||||| || ||||| || || || || || ||||| ||||| |||||||| || || ||| Sbjct 730501 GTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAAGAACCGGAA 730560 Query 24249 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTG 24305 ||||| || ||||| ||||| |||||||| | | | ||||||||| | | | || Sbjct 730561 AAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTG 730620 Query 24306 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 24365 || ||||| |||||||| || ||||| || ||||||||||| ||||| || Sbjct 730621 TCCCCAATCCAGCGCAAGGCCCAATCTGCTTTCTTCTTCACACAAGGCATCGTCTCAATG 730680 Query 24366 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 24425 ||||| |||||| | | |||| || |||||||| || || ||||| | |||||| Sbjct 730681 GCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTA 730740 Query 24426 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 24485 |||||||| ||||| |||||||| ||||| ||||| || || |||||||| | ||||| Sbjct 730741 TACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCCTCA 730800 Query 24486 GTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 24545 |||||||| |||||| | ||| || || | || |||||||| ||||| || || || Sbjct 730801 GTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCTCTT 730860 Query 24546 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 24605 |||||||| || |||| ||||| ||||||||| | || || || | || | | Sbjct 730861 GCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCC 730920 Query 24606 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665 || | | || || || || | ||||| || || |||||||||| || ||||| || Sbjct 730921 CAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCT 730980 Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 || |||||||| | ||| || ||||| |||| || ||||| || ||||| Sbjct 730981 TTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 731030 >seq348299 Length=121795 Score = 132 bits (146), Expect = 6e-26 Identities = 112/138 (81%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 67435 TACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAAT 67494 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 ||||||||||||||||| || || ||||| || ||||| ||||| || || | | ||| Sbjct 67495 TGACTCATTATTTCCCAATATCTGGGCAGTAGAAGCAGTAGGCATCGGGGCAATAAGTAA 67554 Query 53269 ACTATTTCTAAGACCGTA 53286 ||| ||||| | ||| || Sbjct 67555 ACTGTTTCTTACACCATA 67572 Score = 100 bits (110), Expect = 3e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 72180 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 72239 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 ||||||||||||| ||||||| |||||| | ||| || || | || ||||| || | Sbjct 72240 AATAAATGGTTTCAAAGATCTGCTTATTCAATAATTGGGCCTCTGGACTCTCAAAAGGGT 72299 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 72300 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 72359 Query 53568 TCTTATTAGA 53577 ||||| || Sbjct 72360 GTTTATTTGA 72369 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||| ||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 78629 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 78688 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 ||||| || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 78689 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 78748 Query 54145 CGGTTCCAAGTATAT 54159 ||||||| ||| || Sbjct 78749 AGGTTCCAGGTAAAT 78763 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| |||| ||| || ||||||||||| | || || ||||| || || || || || | Sbjct 91129 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 91188 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | ||||| | || || ||| | || || | || ||| |||| Sbjct 91189 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 91248 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 91249 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 91294 >seq350466 Length=2871019 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 1672266 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 1672325 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| |||||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 1672326 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1672385 Query 24277 C 24277 | Sbjct 1672386 C 1672386 Score = 111 bits (122), Expect = 2e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 1673933 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1673992 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||| || || |||||||| | |||||||||||||| |||||| Sbjct 1673993 AATTTGGAAGCCATAGAAACAACGGGCCTCGGTAATCTGAACTTCT 1674038 >seq348784 Length=1834159 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | || |||||||| |||||||| ||||| || || | || || Sbjct 1483990 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 1484049 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 1484050 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGGC 1484108 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 || |||||| | ||||| || || |||| ||||||||||||||| ||||| |||||| | Sbjct 1493985 ACCTCTTCCGCCGTCCAGAAGGACGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGGG 1494044 Query 24693 TATTGAATTGGAAAAATAACAAATC 24717 || || |||||||| || || |||| Sbjct 1494045 TACTGGATTGGAAAGATGACGAATC 1494069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590998028325840