Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq349426 286 4e-72 seq350546 114 2e-20 >seq349426 Length=1377539 Score = 286 bits (316), Expect = 4e-72 Identities = 266/338 (79%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||| || ||||| ||||| | | | | |||| | ||||| |||||||||||||| Sbjct 291354 AGCAGGGTTTCAATGTCAGGCTCGATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGC 291413 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||| | ||||||| |||||||||||||||||||| |||||||||||| Sbjct 291414 ACGGGCACACCGTCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTGCGG 291473 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| || ||||||| |||| || |||||| ||| || | | |||||| || Sbjct 291474 CACACCGGGGACCAGGTGATGAACTTAGGGTCGGTCATTAGAGCAGTGGCGTCGTCACTT 291533 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| ||||| |||| || |||||||||||||||||||| ||| | | || || ||| Sbjct 291534 GGCGTGGGCAGAACCTCCCGAAGGAAGGCGAAGAGCGGATGCGCCTTCTCGCCATTCACC 291593 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||| ||||||||||| ||||| |||||||| ||| || || ||||||| |||| Sbjct 291594 TCGCACTTTTCGAAGAGCATGAAGTTGGGCTCGAACCCGCCGCCTGGTCGGACGTACTTC 291653 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||| || || |||||| | |||| |||||||||||| Sbjct 291654 AGGCAATTCAGGATCTCCTCGTTCTTGGCGTTTTCCTG 291691 Score = 156 bits (172), Expect = 5e-33 Identities = 179/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| || ||||| || ||||| ||||| ||||| | ||| |||| Sbjct 291949 CCTGATGCCCAAACTGGTTGCAGGGGAAGCCGAGCACGACCAGGCCCCGGGGTCCGAGGC 292008 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||| || |||||||| ||||| ||||| ||||| | |||||||| || |||| Sbjct 292009 GCCGCTGCAGGTCATTCATCTGGGTGTAGTCCCGCACCGTTGTGCCTCAGAGCGATGCTA 292068 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 ||||||| ||||||| ||| |||||| | | || | | | || || || |||| Sbjct 292069 CGTTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGGACAGGTGGAAGGGCTCCCCGCCGG 292128 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCTCTGCCGCGGCAAGCTGTGCCG 83630 | ||||| || |||||| ||||||| | | | ||||||| || ||| |||| Sbjct 292129 CCAGAGGGCGCGCGGAGAAGCCGTACACTGTGCGCGGGGCTGCCGCCGCCAGCGCGGCCG 292188 Query 83631 C 83631 | Sbjct 292189 C 292189 >seq350546 Length=1443429 Score = 114 bits (126), Expect = 2e-20 Identities = 202/287 (70%), Gaps = 7/287 (2%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| |||||| || ||| ||| Sbjct 1127153 GCAGCTGCGCAGCATCTACGAGAGCA-GCTTGTCCATCGGCAACTTTGCCTCGCGCCTGC 1127211 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 1127212 TGGTGCACCTGTTCCCGGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 1127271 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| || | | |||| ||||| Sbjct 1127272 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGTATCAAGCTCATCCGCCACTAC 1127330 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| |||| |||| ||| || || || || |||| ||||| ||| Sbjct 1127331 GTGCAGCTGCTCTACCCACGGGCCAAGAATGACCGTGTCTGGACGCTGGAGTTCGTGGGC 1127390 Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 ||||||||||||||||||||||| | |||||| || |||||| Sbjct 1127391 AAACTGGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 1127435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606004074049320