Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq349435 91.5 3e-13 >seq349435 Length=571210 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||| | ||||| || |||||||| |||||||| | || ||||| Sbjct 56448 GCATTTTTTGGAGCCCAGATGAATTCCTTCATCCATGTGATTATGTATTCATACTATGGG 56389 Query 52117 ATGGCCGCTTGTGGTCC-TATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || | || || | |||||||| ||||| ||||||||||| || || || || Sbjct 56388 TTAGCTGCCTTCGGCCCGTGGATTCAGAAA-TATCTCTGGTGGAAACGATACCTGACCAT 56330 Query 52176 AATGCAGTTGGT 52187 ||||| |||| Sbjct 56329 GCTGCAGCTGGT 56318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918961830859320