Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq350557 141 1e-28 seq349974 102 9e-17 seq349767 100 3e-16 seq349183 100 3e-16 seq346460 100 3e-16 seq350455 98.7 1e-15 seq349041 98.7 1e-15 seq350340 89.7 6e-13 seq346459 89.7 6e-13 seq350747 87.8 2e-12 seq350092 87.8 2e-12 seq55377 87.8 2e-12 seq349717 86.0 7e-12 seq350426 84.2 2e-11 seq349925 82.4 9e-11 seq349725 82.4 9e-11 >seq350557 Length=1960230 Score = 141 bits (156), Expect = 1e-28 Identities = 173/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||| | |||||| |||| ||| ||| || || ||||||||||| | | Sbjct 910645 CCGCCTCGCAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCTGAC 910704 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || ||||| || |||||||| || || ||||||||||| | || Sbjct 910705 AGAGTGCGGCCATCCTCCAGCTGTTTGCCAGCGAAGATCAGCCGCTGCTGGTCAGGTGGG 910764 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||||||| |||||| ||||| || | | ||||| || | || || Sbjct 910765 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 910824 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACGCC 43192 || | |||||||| |||||||| || ||||| |||||||| ||||| | | |||| Sbjct 910825 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCTCTGCGCC 910880 >seq349974 Length=2005233 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 566547 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 566606 Query 60126 TACTACCGAGGATTGA 60141 ||||| |||||| ||| Sbjct 566607 TACTAACGAGGAGTGA 566622 >seq349767 Length=250266 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 155400 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 155459 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 155460 ATACTAACGAGGA 155472 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 102026 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 101967 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 101966 TACTAACGAGGA 101955 >seq349183 Length=1390819 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1340314 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1340373 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 1340374 TACTAACGAGGAT 1340386 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1337409 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1337468 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1337469 TACTAACGAGGA 1337480 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | || | |||| |||| ||| ||| || || || ||||| |||| | Sbjct 1325146 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 1325205 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || || ||||| || || || || || || | ||||||||| | || Sbjct 1325206 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 1325265 Query 43077 ACGCTCTCCTTGTCCATG-ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || || ||| | | || || || |||| || | | ||||| || | ||||| Sbjct 1325266 ATGC-CTTCTTTTTCTTGTATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 1325324 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||||||||||| || || || ||||| |||||||| |||||| Sbjct 1325325 CTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCATT 1325373 >seq346460 Length=123864 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 45446 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 45505 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 45506 ATACTAACGAGGA 45518 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 123640 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 123699 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 123700 TACTAACGAGGA 123711 >seq350455 Length=1135605 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 65072 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 65013 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 65012 TACTAACGAGGA 65001 >seq349041 Length=483433 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 9143 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 9084 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 9083 TACTAACGAGGA 9072 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| |||| |||||||| Sbjct 4895 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACGCACCACTA 4954 Query 60126 TACTACCGAG 60135 ||||| |||| Sbjct 4955 TACTAACGAG 4964 >seq350340 Length=1189717 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 684436 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 684377 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 684376 TACTAACGAGGA 684365 >seq346459 Length=109205 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| | |||||||||||||||||||||||| ||||||||| || ||||||||||||| Sbjct 50623 CTCCCCATCAGGGAATCGAACCCTGGTCTCCCACGTGACAGGTGGGGATACTCACCACTA 50564 Query 60126 TACTACCGAGGA 60137 ||||| ||||| Sbjct 50563 TACTAAAGAGGA 50552 >seq350747 Length=3474718 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/65 (91%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 60074 CAGGGAATCGAACCC-TGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACC 60132 ||||||||||||||| ||||||||| | |||||||||| |||||||||||||||||| | Sbjct 2862117 CAGGGAATCGAACCCCTGGTCTCCCTCATGACAGGCGGGGATACTCACCACTATACTAAC 2862176 Query 60133 GAGGA 60137 ||||| Sbjct 2862177 GAGGA 2862181 >seq350092 Length=1631532 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 |||||| |||||||||||| || |||||||||||| |||||||||||||||||| |||| Sbjct 66602 GGGAATTGAACCCTGGTCTTCCACGTGACAGGCGGGGATACTCACCACTATACTAACGAG 66661 Query 60136 GAT 60138 ||| Sbjct 66662 GAT 66664 >seq55377 Length=330 Score = 87.8 bits (96), Expect = 2e-12 Identities = 58/63 (92%), Gaps = 1/63 (2%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTG-ACAGGCGGACATACTCACCACTATACTACCGA 60134 ||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| ||| Sbjct 112 GGGAATCGAACCCCGGTCTCCCGCGTGTACAGGCGGGGATACTCACCACTATACTAACGA 53 Query 60135 GGA 60137 ||| Sbjct 52 GGA 50 >seq349717 Length=1987449 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||| |||||||||| ||| ||||||||| Sbjct 447552 CTCCCCGTCGGGGAATCGAACCCCAGTCTCCCGCATGACAGGCGGGGATATTCACCACTA 447493 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 447492 TACTAACGAGGA 447481 >seq350426 Length=1873211 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| | ||||||| ||||||| ||||||||| ||||||||||| ||||||||||||| Sbjct 1768227 CTCCCTGTCAGGGAAACGAACCCCGGTCTCCCGTGTGACAGGCGGGGATACTCACCACTA 1768168 Query 60126 TACTACCGAGGAT 60138 ||||| |||||| Sbjct 1768167 TACTA-TGAGGAT 1768156 >seq349925 Length=578316 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| | |||||||| |||||||||||||| | |||||||| ||| ||||||||||||| Sbjct 262241 CTCCCCATCAGGGAATTGAACCCTGGTCTCCTGTGTGACAGGTGGAGATACTCACCACTA 262182 Query 60126 TACTA 60130 ||||| Sbjct 262181 TACTA 262177 >seq349725 Length=548853 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || ||||||||||||||| ||||||| || |||||||||| ||||||||||||| Sbjct 441789 CTCCCCGTCAGGGAATCGAACCCCGGTCTCCTGCATGACAGGCGGGGATACTCACCACTA 441730 Query 60126 TACTA 60130 |||| Sbjct 441729 GACTA 441725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569194508271240