Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq349686 360 2e-94 seq348784 107 2e-18 seq350466 98.7 9e-16 seq350805 82.4 7e-11 >seq349686 Length=1138722 Score = 360 bits (398), Expect = 2e-94 Identities = 619/891 (69%), Gaps = 16/891 (2%) Strand=Plus/Plus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| ||| ||| | ||||| |||| |||||||| |||||||| || || || | Sbjct 730139 TTGACATCACTCCCATCCTCTGATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 730198 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC 16046 | || | |||||||||||||||||| ||||| ||||||| | || | | | | || Sbjct 730199 CCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCT--ACTCT-GAAAACCTTGC 730255 Query 16047 ---ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAAT 16103 | |||| |||| || | |||||| ||||| | || || ||||| ||||| ||| Sbjct 730256 TAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGCACTCAATGTACTGCTTCATCAAAG 730315 Query 16104 CACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATAT 16163 || ||||| || || | || ||||| | || || || | || | | |||||| Sbjct 730316 TGCAATTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCC 730375 Query 16164 TAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTT----AATAAG 16219 |||| || | |||||||| ||| ||||| | || || | || | ||| || | | Sbjct 730376 TAACTGCATTGATGATTATTTCTTTTACT-CTCTGTT---CTGAAGATTTGTGCAACAGG 730431 Query 16220 TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCG 16279 ||||| ||||| | || ||||| ||||||||||| || ||||| || || || | || Sbjct 730432 TGTTTGAACATCAGGCAGGCAAAGTCACAATGCAAGCCCTCGTCTCTGCTAATAAGTTCA 730491 Query 16280 TTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAAT 16339 || ||||| || || || ||||| ||||||||||| || | ||| ||||| | ||||| Sbjct 730492 TTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAA 730551 Query 16340 GAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT 16399 ||||| |||||||| || ||||| ||||| ||||| || |||| || || || || || Sbjct 730552 GAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTA 730611 Query 16400 CTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATG 16459 | ||| | ||||| ||||||| |||||| | || ||||| ||| Sbjct 730612 GCTTCTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCTTTCTTCTTCACACAAGGCATC 730671 Query 16460 TTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATT 16519 |||| || ||||| || | | | | |||||||| |||| ||| ||||| || || Sbjct 730672 GTCTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATG 730731 Query 16520 AGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCAT 16579 || | |||||||||||| ||||| || || ||||| || || || || ||||| || || Sbjct 730732 AGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAA 730791 Query 16580 CTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATT 16639 | || || | || || ||||| | ||||| || | |||||||| || ||||| Sbjct 730792 CGGGCCTCAGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATG 730851 Query 16640 CCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTA-TCTGA 16698 ||||| || |||||||| || || || | || |||||||| | | || | | || Sbjct 730852 CCATCTCTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTC 730911 Query 16699 AAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGA 16758 | | || ||||| || || || || | || ||||| || | |||||||| || Sbjct 730912 AGGGCTT-CCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGA 730970 Query 16759 AGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAA 16809 ||| |||| || |||||||| | ||| || || | ||| | |||||||| Sbjct 730971 AGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAA 731021 >seq348784 Length=1834159 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 || ||||||| ||||| | || ||||||||| | | | || |||||||| | Sbjct 1473396 TTCAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAAC 1473455 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || |||||||||||||||||||| ||||| ||||| |||| Sbjct 1473456 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCCTCTAAGGAAATGTTTT 1473515 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 1473516 CCATAAAATCAAAGGGATTTTCTG 1473539 >seq350466 Length=2871019 Score = 98.7 bits (108), Expect = 9e-16 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 ||||| || || || | || || ||||| || || || ||||| ||||||||||| || Sbjct 1672268 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1672327 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| ||||| |||||||| || ||||| ||||| ||||| || Sbjct 1672328 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 1672387 Query 16379 ACCA 16382 |||| Sbjct 1672388 ACCA 1672391 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| ||| ||| | ||||| || | |||||||| |||||||| || || || | Sbjct 1670465 TTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 1670524 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 | || | |||||||||||||||||| ||||| ||||||| Sbjct 1670525 CCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTT 1670563 >seq350805 Length=619470 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/145 (73%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 ||| |||||| ||||| | || ||||||||| | | | || |||||||| | Sbjct 229911 TTTTAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAAC 229852 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTT-GTTTTTCCTTCTAATGAAATATTT 16003 ||||| || |||| || |||||||||||| |||| || ||||| ||||| ||| Sbjct 229851 GCTGATACTCTGAAACTTGTTTCTCAAAGAAATTTCCTTTTCCCCTCTAAGGAAATGTTT 229792 Query 16004 TCCATAAAATCAAAAGGATTTTTTG 16028 |||||| ||||||| ||||||| || Sbjct 229791 TCCATACAATCAAAGGGATTTTCTG 229767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460390324483800