Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq349686 154 3e-32 >seq349686 Length=1138722 Score = 154 bits (170), Expect = 3e-32 Identities = 298/438 (68%), Gaps = 5/438 (1%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||||||||| ||||| ||||||||| ||| | || || || || |||||| Sbjct 730592 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCGATATTCTGG 730533 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | || | ||||||| ||||| | |||||||| | ||| || ||| Sbjct 730532 CTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGAC 730473 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTG-ATACCCC 102096 || || | ||| | |||||||| ||| || |||| ||| | ||||| | | | Sbjct 730472 GAGGGCTTGCATTGTGACTTTGCCTGCCTGATGTTCAAACA----CCTGTTGCACAAATC 730417 Query 102097 ATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCT 102156 ||| | | || | ||||| ||| | || || | || ||||| || || || Sbjct 730416 TTCAGAACAGAGAGTAAAAGAAATAATCATCAATGCAGTTAGGATAGAACAGGAGTTCCT 730357 Query 102157 CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACAT 102216 ||| | |||||||||| || | | || ||||| |||| ||||||| |||||||| Sbjct 730356 CACGGAGGCCCTGCCTGTGAAGCTCATTGGGATGAATTGCACTTTGATGAAGCAGTACAT 730297 Query 102217 TGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTAC 102276 ||| | |||||||||| ||| || | || |||| | ||| | | || Sbjct 730296 TGAGTGCGTGGCAGATAGACTTATGCTGGAGCTGGGCTTTAGCAAGGTTTTCAGAGTAGA 730237 Query 102277 CAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAA 102336 || || || || ||||| |||||||| || ||| ||||| ||||| ||||| || Sbjct 730236 AAATCCATTTGACTTTATGGAAAATATTTCACTGGAGGGGAAGACTAACTTCTTTGAGAA 730177 Query 102337 GAGAGTCGCCGAGTATCA 102354 |||||| | |||||||| Sbjct 730176 GAGAGTAGGTGAGTATCA 730159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984931006028765