Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq349686 444 7e-120 seq216324 284 2e-71 seq348299 127 3e-24 seq350466 123 3e-23 seq350122 102 1e-16 seq348784 93.3 5e-14 >seq349686 Length=1138722 Score = 444 bits (492), Expect = 7e-120 Identities = 633/890 (71%), Gaps = 3/890 (0%) Strand=Plus/Plus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| |||||||| | || || ||||| || | || || || || ||||| || || Sbjct 730141 GACATCACTCCCATCCTCTGATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 730200 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAAT 33395 |||| ||| ||||||||||| || ||||| ||||| || || ||| || |||| Sbjct 730201 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAG 730260 Query 33396 CCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33455 |||| || || | ||||||||| ||| | || || || ||||||| ||| Sbjct 730261 CCCAGCTCCAGCATAAGTCTATCTGCCACGCACTCAATGTACTGCTTCATCAAAGTGCAA 730320 Query 33456 TTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACC 33515 ||||| || ||||| || || || || ||| | || || || || ||||| || || Sbjct 730321 TTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACT 730380 Query 33516 GCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAAC 33575 ||||| | || || | | || | | ||| | | || || | ||||| ||| Sbjct 730381 GCATTGATGATTATTTCTTTTACTCTCTGTTCTGAAGATTTGTGCAACAGGTGTTTGAAC 730440 Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635 |||| || || || || || |||| ||||||||||| ||||| | ||| || |||||| Sbjct 730441 ATCAGGCAGGCAAAGTCACAATGCAAGCCCTCGTCTCTGCTAATAAGTTCATTGGAAAAC 730500 Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 ||||| || ||||| || || || || || ||||| ||||| || || || || |||||| Sbjct 730501 GTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAAGAACCGGAA 730560 Query 33696 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTG 33752 |||||||| ||||| |||||||||||||| | | | |||||||| | | | || Sbjct 730561 AAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTG 730620 Query 33753 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33812 || ||||| |||||||| || ||||| || |||||||||||||| || ||| Sbjct 730621 TCCCCAATCCAGCGCAAGGCCCAATCTGCTTTCTTCTTCACACAAGGCATCGTCTCAATG 730680 Query 33813 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33872 ||||| |||||| | | |||| || |||||||| ||||| || || | |||||| Sbjct 730681 GCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTA 730740 Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 |||||||| ||||| |||||||| ||||| || || || || |||||||| | ||||| Sbjct 730741 TACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCCTCA 730800 Query 33933 GTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTG 33992 |||||||| |||||| | ||| || || | || |||||||| ||||| ||||| || Sbjct 730801 GTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCTCTT 730860 Query 33993 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 34052 |||||||| || |||| ||||| ||||||||| | || || || | || | | Sbjct 730861 GCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCC 730920 Query 34053 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 34112 || | | || || || || | ||||| || || |||||||||| || ||||| || Sbjct 730921 CAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCT 730980 Query 34113 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 || |||||||| | ||| || ||||| |||| ||| || || || ||||| Sbjct 730981 TTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 731030 >seq216324 Length=568 Score = 284 bits (314), Expect = 2e-71 Identities = 272/346 (79%), Gaps = 2/346 (1%) Strand=Plus/Minus Query 188309 TTTTTATACTTTGAATGCATTCGGACATTTATACAAGGGAGTCCTGTTCTAATATTGGCA 188368 |||||||||||||| | || ||||||||| |||| | ||||||| |||| |||| Sbjct 566 TTTTTATACTTTGATTCTATACGGACATTTGTACATGAAAGTCCTGCCTTAATTTTGGTG 507 Query 188369 TCAATGTTCGGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCC 188428 | | ||||| | || |||||||| || |||||| || |||||||||| |||||| Sbjct 506 TTGGCCCTTGGATCCTT-GGTTTGATTTTAGCCTTGACTGTAAACAGACATAAGCATCCC 448 Query 188429 CTGAATCTGTACCTACTTTGT-GGATTTACACTGTTAGAATCTCTAACGCTGGCCTCTGT 188487 || || || ||||| |||| | |||||||||||||| |||||||| || |||||| || Sbjct 447 CTTAACCTATACCTGCTTTTTTGGATTTACACTGTTGGAATCTCTGACCGTGGCCTTCGT 388 Query 188488 TGTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTT 188547 ||||||||||||||||| | | | || | ||||||||||| ||||| |||||| || Sbjct 387 TGTTACTTTCTATGATGTGTATGTTGTCCTGCAAGCTTTCATACTGACTTGTGCAGTATT 328 Query 188548 TCTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 ||||| | ||||| || |||| |||| || |||||||||||||| ||| ||| | |||| Sbjct 327 TCTTGGTTTGACTGTATATACTTTACAGTCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 268 Query 188608 ATTGTTTGCTGCTTTCTGGATTTTAATTTTGTCAGGAGTCTTGAGG 188653 | ||||||||| ||| |||||||| |||||||||| |||||||| Sbjct 267 ACTGTTTGCTGGTTTGTGGATTTTGTGTTTGTCAGGAATCTTGAGG 222 >seq348299 Length=121795 Score = 127 bits (140), Expect = 3e-24 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||| || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 67435 TACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAAT 67494 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 ||||||||||||||||| || || ||||| || ||||| ||||| || || | | ||| Sbjct 67495 TGACTCATTATTTCCCAATATCTGGGCAGTAGAAGCAGTAGGCATCGGGGCAATAAGTAA 67554 Query 62507 ACTATTTCTAAGACCGTA 62524 ||| ||||| | ||| || Sbjct 67555 ACTGTTTCTTACACCATA 67572 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || | || || || || | ||| || || || || || || | Sbjct 72180 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 72239 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||||||||||||||||| |||||| | ||| || || || || ||||| || | Sbjct 72240 AATAAATGGTTTCAAAGATCTGCTTATTCAATAATTGGGCCTCTGGACTCTCAAAAGGGT 72299 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | |||||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 72300 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 72359 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 72360 GTTTATTTGA 72369 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||| ||||| |||||||| ||||||||||| || | || || || || | | Sbjct 78629 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 78688 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 78689 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 78748 Query 63383 CGGTTCCAAGTATATGGC 63400 ||||||| ||| || || Sbjct 78749 AGGTTCCAGGTAAATAGC 78766 >seq350466 Length=2871019 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| ||||| | ||| || ||||||||||| || ||||| || || || || | Sbjct 1672266 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 1672325 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || |||||||||||||| ||||| ||||||||||||| Sbjct 1672326 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1672385 Query 33724 C 33724 | Sbjct 1672386 C 1672386 Score = 105 bits (116), Expect = 8e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 1673933 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1673992 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || || || || |||||||| | |||||||||||||| |||||| Sbjct 1673993 AATTTGGAAGCCATAGAAACAACGGGCCTCGGTAATCTGAACTTCT 1674038 >seq350122 Length=1380883 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| | | | || | ||||||||||| ||||| |||||| ||| Sbjct 1058249 GTTACTTTCTATGATGTGTATGTTGTCCTGCAAGCTTTCATACTGACTTGTGCAGTATTT 1058190 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| || |||| |||| || |||||||||||||| ||| ||| | |||| Sbjct 1058189 CTTGGTTTGACTGTATATACTTTACAGTCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 1058131 Score = 95.1 bits (104), Expect = 2e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 ||||| ||||||||||||||||||||||||| ||||| ||||| || |||||||||||| Sbjct 1069783 TGCTCTTCCATCGAGGACGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGCGTGCAC 1069724 Query 188232 ATACGAATGG 188241 || ||||||| Sbjct 1069723 ATCCGAATGG 1069714 Score = 86.0 bits (94), Expect = 8e-12 Identities = 82/104 (79%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 188241 GCATTTCTAAGAAAAGTCTACGGTATCCTTG-TCTACAATTTCCTTTAACAACGGCAACA 188299 || |||||||||||||||||| | |||||| ||| ||| ||| ||||| || | ||| Sbjct 1063521 GCCTTTCTAAGAAAAGTCTACAGCATCCTTTCTCTCCAAGTTCTCTTAACTACAGTGACA 1063462 Query 188300 GCTGCAGTATTTTTATACTTTGAATGCATTCGGACATTTATACA 188343 | ||| | |||||||||||||| | || ||||||||| |||| Sbjct 1063461 TCAGCATTTTTTTTATACTTTGATTCTATACGGACATTTGTACA 1063418 >seq348784 Length=1834159 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | || || ||||| |||||||| ||||| || || | || || Sbjct 1483990 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 1484049 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| || |||||||| Sbjct 1484050 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGGC 1484108 Score = 82.4 bits (90), Expect = 1e-10 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || |||||| | ||||| || || |||| ||||||||||||||| ||||| |||||| | Sbjct 1493985 ACCTCTTCCGCCGTCCAGAAGGACGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGGG 1494044 Query 34140 TATTGGATTGGGAAAATAACAAATC 34164 || |||||||| || || || |||| Sbjct 1494045 TACTGGATTGGAAAGATGACGAATC 1494069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626928445596240