Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq349686 318 5e-82 seq348784 114 1e-20 seq348299 96.9 3e-15 >seq349686 Length=1138722 Score = 318 bits (352), Expect = 5e-82 Identities = 611/890 (69%), Gaps = 13/890 (1%) Strand=Plus/Plus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387 ||| |||||| | ||||| |||| |||| || | || || || |||||||| || || | Sbjct 730146 CACTCCCATCCTCTGATACTCACCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCCTCCA 730204 Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447 |||| |||| ||||||||| ||| ||||| | ||| |||| || || | | || | Sbjct 730205 GTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAGCCCA 730264 Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507 ||| | | ||||||||| ||| | || || ||||| ||| ||| ||||||| Sbjct 730265 GCTCCAGCATAAGTCTATCTGCCACGCACTCAATGTACTGCTTCATCAAAGTGCAATTCA 730324 Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567 | || || || | ||| || | || | || | ||||||| |||||| |||| |||| Sbjct 730325 TCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCAT 730384 Query 11568 CAATGATTATCGACGTTA-TAACT-TCCTTAGATGGTGGATGTAATAAATGTTTAAACAT 11625 |||||||| ||| | || | || || | | || || | ||||| ||||| Sbjct 730385 TGATGATTATTTCTTTTACTCTCTGTTCT--GAAGATTTGTGCAACAGGTGTTTGAACAT 730442 Query 11626 TAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGT 11685 | || ||||| |||||||| || || |||||||| || || |||||||| ||||| || Sbjct 730443 CAGGCAGGCAAAGTCACAATGCAAGCCCTCGTCTCTGCTAATAAGTTCATTGGAAAACGT 730502 Query 11686 TAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAA 11745 | || ||||||| ||||||||| || | ||| ||||| | ||||| ||||| ||||| Sbjct 730503 GAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAAGAACCGGAAAA 730562 Query 11746 GAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT--ACCTTGTTGCTA 11803 ||| || || ||||| || ||||| ||||| || | |||||||||| | ||| || | Sbjct 730563 GAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTC 730622 Query 11804 GATA-TCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGC 11862 | |||| ||||||||| |||||||| || || || ||| || || || || Sbjct 730623 CCCAATCCAGCGCAAGGCCCAATCTGCTTTCTTCTTCACACAAGGCATCGTCTCAATGGC 730682 Query 11863 GTTAAATAAATGCATTT--TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTA 11920 || || | | ||| ||||| | |||| | | || || || || | | |||| Sbjct 730683 ATTGAAGAGAA--ATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTA 730740 Query 11921 TACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCT 11980 |||||||| ||||| || |||||||| || ||||| || ||||||||||| || ||||| Sbjct 730741 TACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCCTCA 730800 Query 11981 GAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTA 12040 | | ||| || || ||| | ||| | || || |||||||| || ||||| || Sbjct 730801 GTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCTCTT 730860 Query 12041 GATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCC 12100 | |||||| || || || | ||| ||||| ||| | || || | | ||| Sbjct 730861 GCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCC 730920 Query 12101 CAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGAT 12160 || | | | || || || | || || || ||| | |||||||| ||| | | | Sbjct 730921 CAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCT 730980 Query 12161 TGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 | |||||||| | ||| |||||||| || | ||||| || || || || Sbjct 730981 TTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 731030 >seq348784 Length=1834159 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || || ||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 1483988 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 1484047 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 1484048 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGG 1484107 Query 11772 CTACTACTCTTTCTCC 11787 | || || ||||| || Sbjct 1484108 CCACCACCCTTTCCCC 1484123 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | || || ||||||| ||||| ||||| ||||| |||| ||| || || Sbjct 1488413 ATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAACATTCTCGATGAG 1488472 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 |||||||| ||||||||||| || ||||||| | |||||| ||| Sbjct 1488473 AATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGTACTTCC 1488518 >seq348299 Length=121795 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | || || || || || ||||| |||||||| Sbjct 67436 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 67495 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | ||||| || | ||||| ||||||||||| || || || || | Sbjct 67496 GACTCATTATTTCCCAATATCTGGGCAGTAGAAGCAGTAGGCATCGGGGCAATAAGTAAA 67555 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 67556 CTGTTTCTTACACCAT 67571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466375542041520