Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq350759 141 8e-29 seq348463 86.0 5e-12 >seq350759 Length=3492976 Score = 141 bits (156), Expect = 8e-29 Identities = 129/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||| |||||| ||| ||||||| || || || |||||||||||||| ||||| || | Sbjct 2680969 TCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGG 2680910 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | |||| |||||||| |||||||||||||||||| Sbjct 2680909 GCACACCCAGGCCCATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTCA 2680850 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151 ||||||| ||||| || | |||| || || ||||| ||||| Sbjct 2680849 CCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCAT 2680807 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 21280 TGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGC 21339 |||| || ||||||||||| ||||||||||| || || || || || | ||| || || Sbjct 2678599 TGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCTAAATCCCCTTCAG 2678540 Query 21340 GGCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTT 21399 | ||| ||||||| | | |||| ||| | |||||||||| || |||||||||| Sbjct 2678539 CTCTGTCGGAGAAGCCCAGGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTT 2678480 Query 21400 TTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCC 21440 | || || | || ||||| | | || |||||| ||| Sbjct 2678479 TCACTCCCTTGGAAGAGAGTTCCTTAGCGTTGGTGGATCCC 2678439 >seq348463 Length=257100 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 2890 CTCATAAACAGATTTTCCTCCAATAACCCAGACCGTGTTTAATTGTTCTTTTAGTT-TGT 2948 || ||||||||| | ||||| | | ||| ||| || || || | | ||| || || Sbjct 8516 CTTATAAACAGAACTGCCTCCCACTATCCAAACCACGTCTACTTTATTTGTTAATTCTGG 8575 Query 2949 ATTGTCTATAGAAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCG 3008 || || ||| | | || ||||| || || || | || ||||| || ||||| | | Sbjct 8576 ATCTTCAATA-AGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTTTG 8634 Query 3009 GTGGTTCACGTAATTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCT 3068 | ||||| | |||||| || | || ||||||||||||| | | ||| || |||| Sbjct 8635 GAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCT 8694 Query 3069 TTTCAGGGATGGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCT 3124 | || || ||||| ||||| || | | ||||||| |||| ||||| || |||| Sbjct 8695 TCTCTGGAATGGAGAACCAGGTCTTCCTAACCATAATCACCAAATTCTGTTTACCT 8750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425862726789840