Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq349686 127 1e-24 seq350466 89.7 4e-13 >seq349686 Length=1138722 Score = 127 bits (140), Expect = 1e-24 Identities = 379/573 (66%), Gaps = 35/573 (6%) Strand=Plus/Minus Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404 ||||| ||||| || | || || |||||||| | |||||||||||| ||| | || Sbjct 730991 ATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGGAGGTGGACCTTTCCAAGGAC 730932 Query 22405 GTACGCCATTGGACAGAAAAACTGACCGAGGCTGAGCGCAGGT---TCATGTCTCACATA 22461 | | || ||| ||| |||| || ||||| || | | || || || | Sbjct 730931 ATTCAGCACTGG---GAAGCCCTGA---AGCCTGAGGAGAGATATTTTATTTCCCATGTG 730878 Query 22462 CTGGCATTCTTTGCAATGGCAGATGGCATTGTAGGCGACAACCTTGTGT-GCAATTTCGC 22520 ||||| ||||||||| ||||||||| ||| || ||| | ||| || ||| || Sbjct 730877 CTGGCTTTCTTTGCAGCAAGAGATGGCATAGTAAATGAAAACTTGGTGGAGCGGTTTAGC 730818 Query 22521 AAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAATGGA 22580 || ||| || | ||| | || ||| | ||||||||| || || | || ||||| Sbjct 730817 CAA-GAAGTTCAG---ATTACTGAGGCCCGTTGTTTCTATGGCTTCCAAATTGCCATGGA 730762 Query 22581 AAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAG----A 22636 ||| |||||| |||||||||||| || || ||| ||| | | |||||| | Sbjct 730761 AAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTACAT---TAAAGATTCCAA 730705 Query 22637 ATCAAGCCGCATTGTTTTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGCACA 22694 | ||| || | |||| || ||| ||||| ||||| || || ||| | Sbjct 730704 AGAAAGGGAATTTCTCTTCAATGCCATTGAGACGATGCCTTGTGTGAAGAAGAAAGCAGA 730645 Query 22695 GTGGGC--TGCACAATGGCTGAAT--GCCACACATAAG-TCTATC-GCAACACGTCTCTT 22748 ||||| ||| |||| || | ||| | ||| | || | | |||| | | Sbjct 730644 TTGGGCCTTGC------GCTGGATTGGGGACAAAGAAGCTACATATGGAGAACGTGTGGT 730591 Query 22749 GGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCT 22808 |||||||| || || |||||| || | ||||| || || |||||| | ||||||||||| Sbjct 730590 AGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCGATATTCTGGCT 730531 Query 22809 GAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGA 22868 |||||||| || ||||| || | |||||||||| || | |||||| | ||||| Sbjct 730530 CAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGACGA 730471 Query 22869 AGGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901 || | || ||||||||||| || || |||| Sbjct 730470 GGGCTTGCATTGTGACTTTGCCTGCCTGATGTT 730438 >seq350466 Length=2871019 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| || || |||||| || | ||||| || || |||||| | ||||||||||| Sbjct 1672386 GCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCGATATTCTGGCTC 1672327 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGA 22868 |||||||| || ||||| || | |||||||||| || | |||||| | ||||| Sbjct 1672326 AAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGACGA 1672268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354640307708149