Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq349183 116 4e-21 seq365069 104 2e-17 seq350747 100 3e-16 seq348243 100 3e-16 seq350504 96.9 3e-15 seq350768 95.1 1e-14 seq350590 95.1 1e-14 seq350558 95.1 1e-14 seq350494 95.1 1e-14 seq350242 91.5 1e-13 >seq349183 Length=1390819 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || | ||| |||| || ||||| | || ||||| || || ||||| || || | Sbjct 1324231 CCTCCCCTTAAGCGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1324290 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| | ||||| |||||||| || ||| ||||||| | ||||| || || || Sbjct 1324291 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 1324350 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| |||||||| ||| || || | | || | ||||| ||||||||||| Sbjct 1324351 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 1324410 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||||||||| || || ||||| || ||||| Sbjct 1324411 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 1324457 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || || |||| | ||||| |||||||| || Sbjct 1324489 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 1324548 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || || || ||||| |||||||| ||| || || Sbjct 1324549 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 1324608 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | |||||||||||||| || Sbjct 1324609 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTC 1324668 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 1324669 TTCACGAAGATCTGCAT 1324685 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || || |||| | ||||| |||||||| || Sbjct 1324717 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 1324776 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || || || ||||| |||||||| ||| || || Sbjct 1324777 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 1324836 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | |||||||||||||| || Sbjct 1324837 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTC 1324896 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 1324897 TTCACGAAGATCTGCAT 1324913 >seq365069 Length=475 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGT 139610 ||| |||| |||| || ||||| ||||||||||| || || || || | || | | Sbjct 235 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 177 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 |||| || || || |||||| ||||||| | |||||| || ||||| || |||||||| | Sbjct 176 CTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCTTTAT 117 Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 | ||| || |||| | ||| | ||| || | |||||| ||||| | || | | Sbjct 116 CCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCGAGAGTGATGG 57 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || |||| || || ||||| || ||||| Sbjct 56 TCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 23 >seq350747 Length=3474718 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGT 139610 ||| |||| |||| || ||||| ||||||||||| || || || || | || | | Sbjct 343439 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 343381 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 |||| || || || |||||| ||||||| | |||||| || ||||| || ||||| || | Sbjct 343380 CTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTAT 343321 Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 | ||| || |||| | ||| | ||| || | |||||| ||||| | || | | Sbjct 343320 CCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCGAGAGTAATGG 343261 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || |||| || || ||||| || ||||| Sbjct 343260 TCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 343227 >seq348243 Length=269726 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGT 139610 ||| |||| |||| || ||||| ||||||||||| || || || || | || | | Sbjct 207268 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 207210 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 |||| || || || |||||| ||||||| | |||||| || ||||| || ||||| || | Sbjct 207209 CTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTAT 207150 Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 | ||| || |||| | ||| | ||| || | |||||| ||||| | || | | Sbjct 207149 CCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCGAGAGTGATGG 207090 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || |||| || || ||||| || ||||| Sbjct 207089 TCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 207056 >seq350504 Length=2770520 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| ||||| | |||| ||||| ||||| || || Sbjct 1549921 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 1549980 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | |||||||| || || |||||||| || || ||| || || Sbjct 1549981 GCAAAGATGAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 1550040 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | ||||||||||||| || Sbjct 1550041 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 1550100 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 1550101 TTCACGAAGATCTGCATA 1550118 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| ||||| | |||| ||||| ||||| || || Sbjct 1550149 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 1550208 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || || || |||||||| || || ||| || || Sbjct 1550209 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 1550268 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| |||||||||| || | ||| | ||||||||||||| || Sbjct 1550269 ACGTTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 1550328 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 1550329 TTCACGAAGATCTGCATA 1550346 >seq350768 Length=2616046 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| ||||| | |||| ||||| ||||| || || Sbjct 1876410 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 1876469 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || || || |||||||| || || ||| || || Sbjct 1876470 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 1876529 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | ||||||||||||| ||| Sbjct 1876530 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTT 1876589 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 1876590 TTCACGAAGATCTGCAT 1876606 >seq350590 Length=2164919 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGT 139610 ||| |||| |||| || ||||| ||||||||||| || || || || | || | | Sbjct 498786 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 498728 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 |||| || || || |||||| ||||||| | |||||| || ||||| || |||| || | Sbjct 498727 CTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTACTTAT 498668 Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 | ||| || |||| | ||| | ||| || | |||||| ||||| | || | | Sbjct 498667 CCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCGAAAGTGATGG 498608 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || |||| || || | ||| |||||||| Sbjct 498607 TCTTCCCCGTCAGGGTCTTCATGAAAATTTGCAT 498574 >seq350558 Length=1915597 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| ||||| | |||| ||||| ||||| || || Sbjct 1692690 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 1692749 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || || || |||||||| || || ||| || || Sbjct 1692750 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 1692809 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | ||||||||||||| ||| Sbjct 1692810 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTT 1692869 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 1692870 TTCACGAAGATCTGCAT 1692886 >seq350494 Length=1629883 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGT 139610 ||| |||| |||| || ||||| ||||||||||| || ||| || | || | | Sbjct 276011 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTA----GTCAAAGTACGTCCA-T 276065 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 |||| || || || |||||| ||||||| | |||||| || ||||| || ||||| || | Sbjct 276066 CTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTAT 276125 Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 | ||| || |||| | ||| | ||| || | |||||| ||||| | || | | Sbjct 276126 CCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCAACCTCGAGAGTGATGG 276185 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || |||| || || ||||| || ||||| Sbjct 276186 TCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 276219 >seq350242 Length=2039022 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGT 139610 ||| |||| |||| || ||||| ||||||||||| || || || || | || | | Sbjct 795406 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 795464 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 |||| || || || |||||| | ||||| | |||||| || ||||| || ||||| || | Sbjct 795465 CTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTAT 795524 Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 | ||| || |||| | ||| | ||| || | |||||| ||||| | || | | Sbjct 795525 CCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCGAGAGTGATGG 795584 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | |||| || || ||||| || ||||| Sbjct 795585 TCTTCCTCGTCAGGGTCTTCACGAAAATCTGCAT 795618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493788411813600