Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq349686 423 3e-113 seq350466 134 2e-26 seq348299 123 4e-23 seq348784 104 3e-17 >seq349686 Length=1138722 Score = 423 bits (468), Expect = 3e-113 Identities = 628/890 (71%), Gaps = 3/890 (0%) Strand=Plus/Plus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||||| |||||||| | || || ||||| || | || || || || ||||| || || Sbjct 730141 GACATCACTCCCATCCTCTGATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 730200 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773 |||| ||| ||||||||||| || ||||| ||||| || | ||| || |||| Sbjct 730201 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAG 730260 Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833 |||| || || | |||||| || || | || || || ||||||| ||| Sbjct 730261 CCCAGCTCCAGCATAAGTCTATCTGCCACGCACTCAATGTACTGCTTCATCAAAGTGCAA 730320 Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893 ||||| || || || || || || || ||| | || || || || ||||| || || Sbjct 730321 TTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACT 730380 Query 49894 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 49953 |||| | || || | | || | | ||| | | ||||| | ||||| ||| Sbjct 730381 GCATTGATGATTATTTCTTTTACTCTCTGTTCTGAAGATTTGTGCAACAGGTGTTTGAAC 730440 Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 |||| || || || || || |||| ||||||||||| ||||| ||||| ||||||||| Sbjct 730441 ATCAGGCAGGCAAAGTCACAATGCAAGCCCTCGTCTCTGCTAATAAGTTCATTGGAAAAC 730500 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAA 50073 ||||| || ||||| || || || || || ||||| ||||| |||||||| || || ||| Sbjct 730501 GTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAAGAACCGGAA 730560 Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTG 50130 |||||||| ||||| ||||| |||||||| || | | |||||||| | | | || Sbjct 730561 AAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTG 730620 Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 || ||||| |||||||| || ||||| || |||||||||||||| || ||| Sbjct 730621 TCCCCAATCCAGCGCAAGGCCCAATCTGCTTTCTTCTTCACACAAGGCATCGTCTCAATG 730680 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 ||||| |||||| | | |||| || |||||||| ||||| || || | |||||| Sbjct 730681 GCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTA 730740 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 |||||||| ||||| |||||||| ||||| || || || || |||||||| | ||||| Sbjct 730741 TACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCCTCA 730800 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 |||||||| |||||| | ||| || || | || |||||||| ||||| || || || Sbjct 730801 GTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCTCTT 730860 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 |||||||| || |||| ||||| ||||||| | | || | || | || | | Sbjct 730861 GCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCC 730920 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || | | || || || || | || || || || |||||||||| || ||||| || Sbjct 730921 CAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCT 730980 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 || |||||||| | ||| || ||||| |||| ||| || || || ||||| Sbjct 730981 TTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 731030 >seq350466 Length=2871019 Score = 134 bits (148), Expect = 2e-26 Identities = 104/124 (84%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| ||||| ||||| |||||||||||||| || ||||| || || || || | Sbjct 1672266 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 1672325 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| |||||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 1672326 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1672385 Query 50102 CAAC 50105 | || Sbjct 1672386 CTAC 1672389 Score = 105 bits (116), Expect = 1e-17 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 1673933 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1673992 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || || || || |||||||| | |||||||||||||| |||||| Sbjct 1673993 AATTTGGAAGCCATAGAAACAACGGGCCTCGGTAATCTGAACTTCT 1674038 >seq348299 Length=121795 Score = 123 bits (136), Expect = 4e-23 Identities = 110/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 67435 TACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAAT 67494 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 || |||||||||||||| || || ||||| || || || ||||| || || | | ||| Sbjct 67495 TGACTCATTATTTCCCAATATCTGGGCAGTAGAAGCAGTAGGCATCGGGGCAATAAGTAA 67554 Query 79179 ACTATTTCTAAGACCGTA 79196 ||| ||||| | ||| || Sbjct 67555 ACTGTTTCTTACACCATA 67572 Score = 100 bits (110), Expect = 4e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || |||||||| || || | || | ||| | ||||| || || || || ||||| ||| Sbjct 72182 TAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCATAA 72241 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||||||||| || |||| |||||| | ||| || ||| | || ||||| || || Sbjct 72242 TAAATGGTTTCAAAGATCTGCTTATTCAATAATTGGGCCTCTGGACTCTCAAAAGGGTAC 72301 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 72302 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGCGT 72361 Query 79480 TTATTAGA 79487 ||||| || Sbjct 72362 TTATTTGA 72369 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| |||||||| ||||||||||| || | || || || |||| | || Sbjct 78633 ACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGT 78692 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| |||||| | | || || ||||||| ||| Sbjct 78693 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGT 78752 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 78753 TCCAGGTAAATAGC 78766 >seq348784 Length=1834159 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || || || |||||||| |||||||| ||||| || || | || || Sbjct 1483990 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 1484049 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| | ||||| || || || ||||| ||||||||||| ||||||||||| Sbjct 1484050 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGGCC 1484109 Query 50104 AC 50105 || Sbjct 1484110 AC 1484111 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| |||||| | ||||| || || |||| ||||||||||||||| ||||| |||||| | Sbjct 1493984 TACCTCTTCCGCCGTCCAGAAGGACGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGG 1494043 Query 50517 ATATTGGATTGGGAAAATAACAAATC 50542 || |||||||| || || || |||| Sbjct 1494044 GTACTGGATTGGAAAGATGACGAATC 1494069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714973894512120