Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30]
366,983 sequences; 2,836,166,969 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq349686 333 3e-86
seq350466 114 1e-20
>seq349686
Length=1138722
Score = 333 bits (368), Expect = 3e-86
Identities = 615/896 (69%), Gaps = 12/896 (1%)
Strand=Plus/Plus
Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413
|| || || ||||| | ||||| |||| ||||| || ||||| |||||||| || ||
Sbjct 730141 GACATCACTCCCATCCTCTGATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 730200
Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473
|||||||| |||||||||||||| || ||||||||| | | || || || | |
Sbjct 730201 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAG 730260
Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533
|| || || | | | |||||| || | ||||||| || || ||| ||| |||
Sbjct 730261 CCCAGCTCCAGCATAAGTCTATCTGCCACGCACTCAATGTACTGCTTCATCAAAGTGCAA 730320
Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593
||||| || || || || ||||| | | || | || || | |||||| ||
Sbjct 730321 TTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACT 730380
Query 13594 GCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTT----AGATGTTT 13649
|| | | | || || |||| || | || | || ||| | | || |||||
Sbjct 730381 GCATTGATGATTATT-TCTTT-TACTCTCTGTTCT--GAAGATTTGTGCAACAGGTGTTT 730436
Query 13650 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13709
|| || | || ||||| |||||||| | |||||| ||||| ||||||||||| || ||
Sbjct 730437 GAACATCAGGCAGGCAAAGTCACAATGCAAGCCCTCGTCTCTGCTAATAAGTTCATTGGA 730496
Query 13710 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCC 13769
||| || | || ||||||| ||||||||| || | ||| ||||| | || || || ||
Sbjct 730497 AAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAAGAACC 730556
Query 13770 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTT 13829
||||||||| || || || ||||||||||| |||| | ||||||||| | | ||||
Sbjct 730557 GGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTC 730616
Query 13830 TTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 13889
||||| ||||| ||||| || | ||| || || | | || ||| || ||
Sbjct 730617 TTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCTTTCTTCTTCACACAAGGCATCGTCTC 730676
Query 13890 GATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAA 13949
|| |||||||| | | |||| | ||||| | | | |||||| || ||||| || |
Sbjct 730677 AATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAG 730736
Query 13950 GCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGC 14009
|||||||||||||| ||||||||||| || || || || || ||||| ||||| | ||
Sbjct 730737 ACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGC 730796
Query 14010 TTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATC 14069
|| | || || || | ||| | || ||||||||||||| || || |||||
Sbjct 730797 CTCAGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATC 730856
Query 14070 ACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT 14129
|| |||||||| || |||| | | |||||| ||| ||| ||| || ||
Sbjct 730857 TCTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGC 730916
Query 14130 TTTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCG 14187
|| ||| | ||| || ||||| ||||| || || || ||| |||||||||| |||
Sbjct 730917 TTCCCAGT--GCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCC 730974
Query 14188 ACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243
||||||| |||||||| ||| || || | ||| |||||||| | |||||
Sbjct 730975 TCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 731030
>seq350466
Length=2871019
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741
|||| ||||| ||||||||||| || ||||| || | || ||||||| ||||||||| |
Sbjct 1672266 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 1672325
Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801
| | ||| ||||| | || || || ||||||||||| || || || ||||||||||| |
Sbjct 1672326 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1672385
Query 13802 CTATTAGTCGTTCTCC 13817
||| | ||||||||
Sbjct 1672386 CTACCACACGTTCTCC 1672401
Score = 87.8 bits (96), Expect = 2e-12
Identities = 77/96 (80%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413
|| || || ||||| | ||||| || | ||||| || ||||| |||||||| || ||
Sbjct 1670467 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 1670526
Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449
|||||||| |||||||||||||| || |||||||||
Sbjct 1670527 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATTT 1670562
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476393375580120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |