Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq349686 333 3e-86 seq350466 114 1e-20 >seq349686 Length=1138722 Score = 333 bits (368), Expect = 3e-86 Identities = 615/896 (69%), Gaps = 12/896 (1%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| | ||||| |||| ||||| || ||||| |||||||| || || Sbjct 730141 GACATCACTCCCATCCTCTGATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 730200 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473 |||||||| |||||||||||||| || ||||||||| | | || || || | | Sbjct 730201 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAG 730260 Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533 || || || | | | |||||| || | ||||||| || || ||| ||| ||| Sbjct 730261 CCCAGCTCCAGCATAAGTCTATCTGCCACGCACTCAATGTACTGCTTCATCAAAGTGCAA 730320 Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593 ||||| || || || || ||||| | | || | || || | |||||| || Sbjct 730321 TTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACT 730380 Query 13594 GCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTT----AGATGTTT 13649 || | | | || || |||| || | || | || ||| | | || ||||| Sbjct 730381 GCATTGATGATTATT-TCTTT-TACTCTCTGTTCT--GAAGATTTGTGCAACAGGTGTTT 730436 Query 13650 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13709 || || | || ||||| |||||||| | |||||| ||||| ||||||||||| || || Sbjct 730437 GAACATCAGGCAGGCAAAGTCACAATGCAAGCCCTCGTCTCTGCTAATAAGTTCATTGGA 730496 Query 13710 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCC 13769 ||| || | || ||||||| ||||||||| || | ||| ||||| | || || || || Sbjct 730497 AAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAAGAACC 730556 Query 13770 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTT 13829 ||||||||| || || || ||||||||||| |||| | ||||||||| | | |||| Sbjct 730557 GGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTC 730616 Query 13830 TTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 13889 ||||| ||||| ||||| || | ||| || || | | || ||| || || Sbjct 730617 TTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCTTTCTTCTTCACACAAGGCATCGTCTC 730676 Query 13890 GATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAA 13949 || |||||||| | | |||| | ||||| | | | |||||| || ||||| || | Sbjct 730677 AATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAG 730736 Query 13950 GCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGC 14009 |||||||||||||| ||||||||||| || || || || || ||||| ||||| | || Sbjct 730737 ACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGC 730796 Query 14010 TTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATC 14069 || | || || || | ||| | || ||||||||||||| || || ||||| Sbjct 730797 CTCAGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATC 730856 Query 14070 ACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT 14129 || |||||||| || |||| | | |||||| ||| ||| ||| || || Sbjct 730857 TCTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGC 730916 Query 14130 TTTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCG 14187 || ||| | ||| || ||||| ||||| || || || ||| |||||||||| ||| Sbjct 730917 TTCCCAGT--GCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCC 730974 Query 14188 ACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 ||||||| |||||||| ||| || || | ||| |||||||| | ||||| Sbjct 730975 TCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 731030 >seq350466 Length=2871019 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||| ||||| ||||||||||| || ||||| || | || ||||||| ||||||||| | Sbjct 1672266 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 1672325 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || ||||||||||| || || || ||||||||||| | Sbjct 1672326 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1672385 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | |||||||| Sbjct 1672386 CTACCACACGTTCTCC 1672401 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| | ||||| || | ||||| || ||||| |||||||| || || Sbjct 1670467 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 1670526 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 |||||||| |||||||||||||| || ||||||||| Sbjct 1670527 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATTT 1670562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476393375580120