Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq350590 95.1 9e-15 >seq350590 Length=2164919 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 |||| ||||| ||||| ||||| | ||| | |||| ||||||||| | ||||| || | Sbjct 498802 CGCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 498743 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 |||| |||||| | || |||| ||| ||||| ||||| |||| || || || || | | Sbjct 498742 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAG 498683 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | | |||| || || |||| | || || | | | ||| || | ||||| Sbjct 498682 GAATTCCTTACTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGA 498623 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 | || | || || || || || || || || |||| ||||||||||| || Sbjct 498622 CCTCGAAAGTGATGGTCTTCCCCGTCAGGGTCTTCATGAAAATTTGCATCTT 498571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379663884301014