Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq349686 197 2e-45 >seq349686 Length=1138722 Score = 197 bits (218), Expect = 2e-45 Identities = 577/879 (66%), Gaps = 26/879 (3%) Strand=Plus/Minus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||| ||| || ||||| |||||| | ||||| || || ||| |||| ||||||||| Sbjct 731021 TTTCCTATCGAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGG 730962 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | || ||||| || || ||||||||| | | | ||||| | | | |||| Sbjct 730961 ACAGCTGAGGAGGTGGACCTTTCCAAGGACATTCAGCACTGGGAAGCCCTGAAGCCTGAG 730902 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||| || | ||||| || || | |||| |||||||| | ||||| || || Sbjct 730901 ---GAGAGATATTTTATTTCCCATGTGCTGGCTTTCTTTGCAGCAAGAGATGGCATAGTA 730845 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGCTT 125236 || || || || || || || ||||| ||| | ||| | |||| || || Sbjct 730844 AATGAAAACTTGGTGGAGCGGTTTAGCCAAGAAGTTCAG-ATTACTGAGGCCCGTTGTTT 730786 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 || || |||||||| || || ||| | || || |||||||| | || ||||| Sbjct 730785 CTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGA 730726 Query 125297 CATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGC 125355 || |||||| ||| | ||| | || || ||||| || || || || ||| ||| Sbjct 730725 CACTTACATTAAAGATTC-CAAAGAAAGGGAATTTCTCTTCAATGCCATTGAGACGATGC 730667 Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGT 125415 | | | | || || || | |||| | || ||||| | ||| | | || | | Sbjct 730666 CTTGTGTGAAGAAGAAAGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAAGCTACAT 730607 Query 125416 ACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTG 125475 | | || | |||| || || || || || || |||||||||||||| ||| ||||| Sbjct 730606 ATGGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTG 730547 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGT 125535 || | || || ||||||||||| || ||||| ||||| || || ||| || || Sbjct 730546 CGTCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAAC 730487 Query 125536 TTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATC 125595 |||| ||||||||||| | || |||||||||||| || |||| ||| | | Sbjct 730486 TTATTAGCAGAGACGAGGGCTTGCATTGTGACTTTGCCTGCCTGATGTT---CAAACACC 730430 Query 125596 TGCGTCCCGA--GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGT 125653 || | | | | |||| ||| || ||||| | || | | | |||| || Sbjct 730429 TGTTGCACAAATCTTCAGA-ACAGAGAGTAAAAG-------AAATAATCATCAATGCAGT 730378 Query 125654 GAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTG 125713 ||||||||||| ||||| || || || |||| || || | | ||||| ||||| || Sbjct 730377 TAGGATAGAACAGGAGTTCCTCACGGAGGCCCTGCCTGTGAAGCTCATTGGGATGAATTG 730318 Query 125714 CAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGG 125773 || | ||| ||||||| |||| ||||||||| | || || ||| || || Sbjct 730317 CACTTTGATGAAGCAGTACATTGAGTGCGTGGCAGATAGACTTATGCTGGAGCTG---GG 730261 Query 125774 C---CGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGA 125830 | ||||| ||| || | | ||||| ||||| || ||| | || ||||| || Sbjct 730260 CTTTAGCAAGGTTTTCAGAGTAGAAAATCCATTTGACTTTATGGAAAATATTTCACTGGA 730201 Query 125831 GGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 ||| ||||| ||||| || ||||||| || | ||||| Sbjct 730200 GGGGAAGACTAACTTCTTTGAGAAGAGAGTAGGTGAGTA 730162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 737659748395080