Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq349686 311 7e-80 seq348784 114 1e-20 >seq349686 Length=1138722 Score = 311 bits (344), Expect = 7e-80 Identities = 608/895 (68%), Gaps = 24/895 (3%) Strand=Plus/Plus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| || ||| | ||||| || | ||||| || ||||| ||||| || || | Sbjct 730139 TTGACATCACTCCCATCCTCTGATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 730198 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTT 12958 | || | ||||||||||||||||| || || ||||||| || | || || Sbjct 730199 CCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACC----TTG 730254 Query 12959 TTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018 || | || | || || | | ||| || || || |||| |||||||| ||||| ||| Sbjct 730255 CTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGCACTCAATGTACTGCTTCATCAAA 730314 Query 13019 TCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATA 13078 || ||||| || || | || ||||||| || || || | || | | |||||| Sbjct 730315 GTGCAATTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATC 730374 Query 13079 TCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTG----ATAG 13134 |||||| | ||| | ||| ||| ||| | | ||| || |||||| | || Sbjct 730375 CTAACTGCATTGATGATTATTTCTTTTACTCTCTGTTCT----GAAGATTTGTGCAACAG 730430 Query 13135 ATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTC 13194 || || ||||||| || ||||| ||||| ||||| || || ||||| || || || || Sbjct 730431 GTGTTTGAACATCAGGCAGGCAAAGTCACAATGCAAGCCCTCGTCTCTGCTAATAAGTTC 730490 Query 13195 GTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAA 13254 || ||||| || || || ||||| || |||||||| || | ||| ||||| | ||||| Sbjct 730491 ATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAA 730550 Query 13255 CGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT 13314 ||||| ||||| || || ||||| ||||| ||||| |||| || | ||| ||||| || Sbjct 730551 AGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGT 730610 Query 13315 ACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCAT 13374 | | ||| | | ||||| |||||| | |||||| | || || || ||| Sbjct 730611 AGCTTCTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCTTTCTTCTTCACACAAGGCAT 730670 Query 13375 ATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTAT 13434 | || || || || || | | | | |||| || ||| ||| ||||| || || Sbjct 730671 CGTCTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAAT 730730 Query 13435 CAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACA 13494 | | ||||||||||| ||||| || |||||||| || |||||||| ||||| ||||| Sbjct 730731 GAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACA 730790 Query 13495 TCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTAT 13554 | ||||| | | ||||||||| | ||| | || | |||||||| || ||||| Sbjct 730791 ACGGGCCTCAGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTAT 730850 Query 13555 CCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC----GTTTT 13610 || || || || ||||| ||||| || | || |||||| | | | || | || Sbjct 730851 GCCATCTCTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTT 730910 Query 13611 CTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAA 13670 | | ||| ||| | ||| || || || | || ||||||||| | ||||||| Sbjct 730911 C--AGGGCTT--CCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAA 730966 Query 13671 AAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAA 13725 | ||||| |||| |||||||||||| ||| ||||| | || | || ||||| Sbjct 730967 AGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAA 731021 >seq348784 Length=1834159 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || ||||| || ||||| || || || ||||| || |||| ||| | Sbjct 1483988 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 1484047 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || ||||| || || |||||||| || || ||||| | Sbjct 1484048 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGG 1484107 Query 13293 CTATCAACCTTTCACC 13308 | | || |||||| || Sbjct 1484108 CCACCACCCTTTCCCC 1484123 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || ||||||||||| ||||| ||||| |||||| Sbjct 1473458 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCCTCTAAGGAAATGTTTTCC 1473517 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| || ||||||| Sbjct 1473518 ATAAAATCAAAGGGATTTT 1473536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429054785828166