Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq350242 86.0 5e-12 seq350747 84.2 2e-11 seq348243 84.2 2e-11 >seq350242 Length=2039022 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | || ||||||| |||||| ||| |||||||||||||||||| |||| Sbjct 795391 ACCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 795450 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | || ||||| ||||| || | |||| | | ||||| || || Sbjct 795451 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGGTCAGGAGG 795510 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| || || ||| | | |||| ||||| | | ||| Sbjct 795511 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGAC 795570 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || ||||| || | || || || ||||| |||||||||||| || Sbjct 795571 CTCGAGAGTGATGGTCTTCCTCGTCAGGGTCTTCACGAAAATCTGCATCTTG 795622 >seq350747 Length=3474718 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG 48571 || ||||||| |||||| ||| |||||||||||||||||| |||| ||| || | Sbjct 343441 CTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA 343382 Query 48572 TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTG 48631 || ||||| ||||| || | | || | | ||||| || || | | |||||| Sbjct 343381 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTA 343322 Query 48632 TCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATG 48691 ||| || || ||| | | |||| ||||| | | ||| ||||| || ||| Sbjct 343321 TCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCGAGAGTAATG 343262 Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 || || || || || || ||||| |||||||||||| || Sbjct 343261 GTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTTG 343223 >seq348243 Length=269726 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG 48571 || ||||||| |||||| ||| |||||||||||||||||| |||| ||| || | Sbjct 207270 CTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA 207211 Query 48572 TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTG 48631 || ||||| ||||| || | | || | | ||||| || || | | |||||| Sbjct 207210 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTA 207151 Query 48632 TCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATG 48691 ||| || || ||| | | |||| ||||| | | ||| ||||| || ||| Sbjct 207150 TCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCGAGAGTGATG 207091 Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 || || || || || || ||||| |||||||||||| || Sbjct 207090 GTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTTG 207052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419367109644983