Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq349686 273 2e-68 seq348681 118 1e-21 seq349852 109 6e-19 seq348784 96.9 4e-15 seq350466 82.4 8e-11 >seq349686 Length=1138722 Score = 273 bits (302), Expect = 2e-68 Identities = 599/896 (67%), Gaps = 8/896 (1%) Strand=Plus/Plus Query 21168 ttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227 ||||||| | |||||| | ||||| |||| ||||| || || || || || ||||| | Sbjct 730139 TTGACATCACTCCCATCCTCTGATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 730198 Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTAC 21287 | |||| ||| ||| ||||||||| |||||||||||||| | | || | || || Sbjct 730199 CCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAA 730258 Query 21288 AACCCAGTTCTGATAATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCA 21346 | ||||| || | |||| ||||||||| || | || || || || ||| || Sbjct 730259 AGCCCAGCTCC-AGCATAAGTCTATCTGCCACGCACTCAATGTACTGCTTCATCAAAGTG 730317 Query 21347 CAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAG 21406 |||||||| || || | || ||||| || || | || | || | |||||| Sbjct 730318 CAATTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTA 730377 Query 21407 ACGGCTTCAACAATTATATTTATTATCCTAGATGTACT--AGGGGGATACAATAATTGTT 21464 || || | | ||||| | | ||| || ||| || || | ||| | |||| Sbjct 730378 ACTGCATTGATGATTATTTCTTTTACTCTC--TGTTCTGAAGATTTGTGCAACAGGTGTT 730435 Query 21465 TAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAG 21524 | ||||||| || ||||| ||||||||||| || || || || || || | |||||| | Sbjct 730436 TGAACATCAGGCAGGCAAAGTCACAATGCAAGCCCTCGTCTCTGCTAATAAGTTCATTGG 730495 Query 21525 AAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTC 21584 |||| || | || ||||| | ||||| || || | ||| ||||| |||||||| | | Sbjct 730496 AAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAAGAAC 730555 Query 21585 CTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATT 21644 | |||||||| ||||| || || |||||||| || || | ||||| || ||||||| || Sbjct 730556 CGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTT 730615 Query 21645 CTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTAT 21704 |||| ||| ||||| ||||| | ||| || | || | |||| || || | Sbjct 730616 CTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCTTTCTTCTTCACACAAGGCATCGTCT 730675 Query 21705 CAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNN 21764 |||| || || || ||| | |||| | ||| | ||| Sbjct 730676 CAATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGA 730735 Query 21765 NACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTG 21824 ||||||||||||||||||||| ||||| || || || || || || || ||||| | | Sbjct 730736 GACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGG 730795 Query 21825 CCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCAT 21884 |||| | | ||||| || ||| || | ||||||||||||||||||| |||| Sbjct 730796 CCTCAGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCAT 730855 Query 21885 CACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATT 21944 | || || ||||| || |||| | || |||||||||| || | | | | Sbjct 730856 CTCTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGG 730915 Query 21945 TTTTCCAAT-CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCA 22003 || ||| | || | | || || || | || || || |||| |||||||||| ||| Sbjct 730916 CTTCCCAGTGCTGA-ATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCC 730974 Query 22004 ATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059 ||| || |||||||| ||| ||||||| ||| || ||||| || ||||| Sbjct 730975 TCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 731030 >seq348681 Length=312524 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || || ||||||| | | ||||| ||||||| ||||||||| || | | Sbjct 72298 AGCTCATCCTCAGTTTCAAACTGAGCAAGAACAGCTCCCACTGAAGTACAGGATATCTGA 72357 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| | ||| ||||||||||| ||||| || |||| |||||||||||| Sbjct 72358 CTCAATGTCCAATTCTCTGAGTCTTCAGAAAAATAAAAACACTTATTCCCAAATCCAATC 72417 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| |||||||| || ||||| Sbjct 72418 CATCCTTTTGGGCAGGTGACATA 72440 >seq349852 Length=739358 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || || ||||||| | | ||||| ||| ||| ||||||||| || | | Sbjct 51569 AGCTCCTCCTCTGTTTCAAACTGAGCAAGAACAGCTTCCAGTGAAGTACAGGATATCTGA 51628 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| ||||| ||||||||||| ||||| || ||| |||||||||||| Sbjct 51629 CTGAATGTCCAATTCTTTGAGTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATC 51688 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| | |||||| || ||||| Sbjct 51689 CATCCTTCTGGGCAGGTGACATA 51711 >seq348784 Length=1834159 Score = 96.9 bits (106), Expect = 4e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 || ||||||| |||||||| | ||| ||||||||| ||| || ||||| | | | Sbjct 1473396 TTCAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAAC 1473455 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||| || || |||||||| ||||| || || || || || Sbjct 1473456 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCCTCTAAGGAAATGTTTT 1473515 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAA 21276 ||||||||||||| |||||||| | || ||| Sbjct 1473516 CCATAAAATCAAAGGGATTTTCTGCTTGAAA 1473546 >seq350466 Length=2871019 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 21168 ttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227 ||||||| | |||||| | ||||| || | ||||| || || || || || ||||| | Sbjct 1670465 TTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 1670524 Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 | |||| ||| ||| ||||||||| |||||||||||||| Sbjct 1670525 CCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTC 1670564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529460818108920