Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq349183 91.5 1e-13 >seq349183 Length=1390819 Score = 91.5 bits (100), Expect = 1e-13 Identities = 171/249 (69%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 26750 TACTTTTTAGT--CAA-ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGAT 26806 |||||||| || ||| | | |||||| | ||||| || || | ||||| ||| | || Sbjct 1325394 TACTTTTTTGTTCCAACAGACAATGCAGATCTTTGTGAAGACCCTCACTGGTAAAACCAT 1325335 Query 26807 CACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAA 26866 ||| | || | || | | |||||||||||| | ||||| ||||| || || Sbjct 1325334 CACTCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTCAAGGGGAAGATACAAGAAAA 1325275 Query 26867 AGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGA 26926 |||||| || || || || || || || || || | | ||| ||||| || ||||||| Sbjct 1325274 AGAAGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGG 1325215 Query 26927 TAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 | | | | ||||| ||||| || ||||| || ||| | || |||||||| | || Sbjct 1325214 GCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCT 1325155 Query 26987 TAGAGGAGG 26995 ||||| || Sbjct 1325154 CAGAGGTGG 1325146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476466637955760