Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq349686 105 2e-17 seq348299 96.9 9e-15 >seq349686 Length=1138722 Score = 105 bits (116), Expect = 2e-17 Identities = 153/213 (72%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 ||||| || ||||||||||| || ||||| | |||| ||| | ||| | ||| Sbjct 730658 AAGAAGAAAGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAAGCTACATATGGAGAA 730599 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-CAAT 22550 ||| | | || ||||||| || |||||||| |||||||| || | ||||| | | || Sbjct 730598 CGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTC-TTTTGCGTCGAT 730540 Query 22551 CTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAG 22610 || ||||| || ||||| | | | ||||| || || |||||||| ||||| | ||||| Sbjct 730539 ATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAG 730480 Query 22611 CCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 | |||| ||||| | ||| || ||||| || Sbjct 730479 CAGAGACGAGGGCTTGCATTGTGACTTTGCCTG 730447 >seq348299 Length=121795 Score = 96.9 bits (106), Expect = 9e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| |||||||| || || |||||| Sbjct 75494 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACCCCATATATG 75435 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| || | || || || | Sbjct 75434 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACTTGGGAACCATCAAATGC 75375 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || || ||| Sbjct 75374 AGCAACCTGTGCACAGAAATAGTAGAGTATACC 75342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1297225270880706