Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq349183 87.8 2e-12 seq350768 84.2 2e-11 seq350558 84.2 2e-11 >seq349183 Length=1390819 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/179 (72%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 23972 TACTTTTTAG--CCAA-ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGAT 24028 |||||||| | |||| | | |||||| | ||||| || || | ||||| ||| | || Sbjct 1325394 TACTTTTTTGTTCCAACAGACAATGCAGATCTTTGTGAAGACCCTCACTGGTAAAACCAT 1325335 Query 24029 TACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAA 24088 || | || || ||| ||| |||||||||||| | ||||| ||||| || || Sbjct 1325334 CACTCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTCAAGGGGAAGATACAAGAAAA 1325275 Query 24089 AGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||||||| || || || || ||||| ||||| | | ||| || || || ||||||| Sbjct 1325274 AGAAGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATG 1325216 >seq350768 Length=2616046 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || || ||||| | || || || | || ||| | || || ||| | Sbjct 1876610 CAAAATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCC 1876551 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || |||||||||||| | || || ||||| || || |||||||| || || || Sbjct 1876550 CAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGA 1876491 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||||| || || | | ||||||||| || ||||||| | | | | ||||| Sbjct 1876490 CCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 1876431 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || ||||| || || Sbjct 1876430 CAACATCCAGAAAGAGTCGAC 1876410 >seq350558 Length=1915597 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || || ||||| | || || || | || ||| | || || ||| | Sbjct 1692890 CAAAATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCC 1692831 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || |||||||||||| | || || ||||| || || |||||||| || || || Sbjct 1692830 CAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGA 1692771 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||||| || || | | ||||||||| || ||||||| | | | | ||||| Sbjct 1692770 CCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 1692711 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || ||||| || || Sbjct 1692710 CAACATCCAGAAAGAGTCGAC 1692690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428013065962365