Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq349183 111 1e-19 seq350768 95.1 1e-14 seq350558 93.3 3e-14 >seq349183 Length=1390819 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | ||| |||| ||||| ||||||||||| || ||||||||||| | | Sbjct 1324231 CCTCCCCTTAAGCGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1324290 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| ||||| || ||| | || |||| ||| ||||| || Sbjct 1324291 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 1324350 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||||||||| || || || ||| || | | | ||||| | ||||||| Sbjct 1324351 ATGCCCTCTTTGTCTTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCACTGGGCTCCA 1324408 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || ||||||| || || || || |||||||| Sbjct 1324409 CCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 1324457 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| ||||||||||| || ||||||||||| | Sbjct 1324458 CCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1324517 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| ||||| || ||| | || |||| ||| ||||| || Sbjct 1324518 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 1324577 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||||||||| || || || ||| || | | | ||||| | ||||||| Sbjct 1324578 GATGCCCTCTTTGTCTTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCACTGGGCTCC 1324635 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || ||||||| || || || || |||||||| Sbjct 1324636 ACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 1324685 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| ||||||||||| || ||||||||||| | Sbjct 1324686 CCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1324745 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| ||||| || ||| | || |||| ||| ||||| || Sbjct 1324746 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 1324805 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||||||||| || || || ||| || | | | ||||| | ||||||| Sbjct 1324806 GATGCCCTCTTTGTCTTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCACTGGGCTCC 1324863 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || ||||||| || || || || |||||||| Sbjct 1324864 ACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 1324913 Score = 104 bits (114), Expect = 2e-17 Identities = 164/232 (71%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| ||||||||||| || ||||||||||| | Sbjct 1324914 CCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1324973 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| ||||| || ||| | || |||| ||| ||||| || Sbjct 1324974 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 1325033 Query 16828 CACGCCCTCTTTGTC--GG--CAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 | |||||||||||| || || ||| ||| || | | | ||||| | ||||| Sbjct 1325034 GATGCCCTCTTTGTCTTGGATCACCTTG-GCCTTGACGTTCTCGATGGTGTCACTGGGCT 1325092 Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || |||| ||||||||| || ||||||| || || || || |||||||| Sbjct 1325093 CCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 1325144 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| |||||||| || || ||||||||||| | Sbjct 1325145 CCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 1325204 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| ||||| || ||| | || |||| ||| ||||| || Sbjct 1325205 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 1325264 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| ||||| || || | | ||| || | | | ||||| | ||||||| Sbjct 1325265 GATGCCTTCTTTTTCTTGTATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 1325324 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||||||||||| || || || || || ||||| ||||||||| Sbjct 1325325 CTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCATT 1325373 >seq350768 Length=2616046 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || ||||| || || |||||||| || | | || | | || Sbjct 1876395 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1876454 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || |||| ||| ||||| || | ||| || || || Sbjct 1876455 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 1876514 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||| | ||||||| |||| |||||||| Sbjct 1876515 TGGATCTTGGC--CTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGG 1876572 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || |||||||| ||||| || || |||||||||||| Sbjct 1876573 TCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATTTTG 1876610 >seq350558 Length=1915597 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| || ||||| || || |||||||| || | | || | | || |||| || Sbjct 1692684 TGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1692743 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | || |||| ||| ||||| || | ||| || || || || || Sbjct 1692744 TTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTG 1692803 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | ||||| | ||||||| |||| ||||||||| || |||| Sbjct 1692804 GC--CTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGG 1692861 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| ||||| || || |||||||||||| Sbjct 1692862 TCAGGGTTTTCACGAAGATCTGCATTTTG 1692890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403276201259170