Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq349686 307 1e-78 seq350466 91.5 2e-13 >seq349686 Length=1138722 Score = 307 bits (340), Expect = 1e-78 Identities = 540/777 (69%), Gaps = 7/777 (1%) Strand=Plus/Plus Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 |||| |||||| || || | || |||||||| ||||||| |||||||| || | Sbjct 730273 ATAAGTCTATCTGCCACGCACTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATG 730332 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || ||||| || || || || | ||| || | || || ||| || | | | Sbjct 730333 AGCTTCACAGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCATTGATGATT 730392 Query 93038 ATTTCTATTACTCTACTATT-TGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096 |||||| ||||||| || || || | ||| || | | | ||| |||| | ||| || Sbjct 730393 ATTTCTTTTACTCT-CTGTTCTGAAGATTTGTGCAACAGGTGTTTGAACATCAGGCAGGC 730451 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTG 93155 |||||| ||| || || ||||||| || || || | ||||| || || | || | Sbjct 730452 AAAGTCACAATGCAAGCCCTCGTCTC-TGCTAATAAGTTCATTGGAAAACGTGAGGCCAG 730510 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | ||||||||||||||||||||| ||||| || |||||| ||| ||||| || || | Sbjct 730511 GCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGC 730570 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275 ||||||| || ||||| || || | |||||| || | | || || | |||| Sbjct 730571 CTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAATCC 730630 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 | || |||||||| ||||| ||||| | |||||| | || || || || || || | Sbjct 730631 AGCGCAAGGCCCAATCTGCTTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGA 730690 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 | | || | || | |||||| ||||| || || || | ||| ||||||||||| Sbjct 730691 GAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAG 730750 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 |||| | || ||||| ||||||||||| || |||||||| | || || || ||||| | Sbjct 730751 AATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCCTCAGTAATCTGAA 730810 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 ||||||| ||| | ||| || | |||||||| ||||| ||||| ||||||||| | Sbjct 730811 CTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCTCTTGCTGCAAAGA 730870 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGAT 93574 |||||| | ||| ||||||| | |||| ||| || || ||||| | | || Sbjct 730871 AAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGA- 730929 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634 | || || ||||| || || || || | |||||||| || || || ||||| || ||| Sbjct 730930 ATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATAC 730989 Query 93635 ATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCT 93691 || | ||| || || || |||| || ||||| |||||||| || ||||| ||| Sbjct 730990 ATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAAGCGGCGGGGGTTTTCT 731046 >seq350466 Length=2871019 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| || || | || || | ||||||||||||||||||||| ||||| || ||| Sbjct 1672286 TCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCA 1672345 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||| ||||| || || |||||||| || ||||| || || | |||||| Sbjct 1672346 AAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTC 1672398 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||||| || || || | ||| ||||||||||||||| | || ||||| Sbjct 1673931 GAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATG 1673990 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||||||||||| || |||||||| | || || || ||||| |||||||| Sbjct 1673991 GCAATTTGGAAGCCATAGAAACAACGGGCCTCGGTAATCTGAACTTCTTG 1674040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554306319412920