Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30]
366,983 sequences; 2,836,166,969 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq350579 95.1 2e-14
seq349873 95.1 2e-14
seq350397 93.3 9e-14
seq346403 91.5 3e-13
seq348991 89.7 1e-12
seq261373 89.7 1e-12
>seq350579
Length=2442689
Score = 95.1 bits (104), Expect = 2e-14
Identities = 70/82 (85%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
|||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 251054 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 251113
Query 142562 GCCCCACATCGGGCAGAAGTCG 142583
||||||| | |||| | | |||
Sbjct 251114 GCCCCACGTTGGGCGGTAATCG 251135
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 264673 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 264614
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 264613 CCCACGTTGGGC 264602
>seq349873
Length=684872
Score = 95.1 bits (104), Expect = 2e-14
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111
|||||||||||||||||||| |||||| ||||||||||||||| ||||| |||||||||
Sbjct 39718 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 39777
Query 142112 CCCCGCCAGAGA 142123
|||| ||||||
Sbjct 39778 TCCCGGCAGAGA 39789
>seq350397
Length=1728484
Score = 93.3 bits (102), Expect = 9e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
|||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 209193 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 209252
Query 142562 GCCCCACATCGGGC 142575
||||||| | ||||
Sbjct 209253 GCCCCACGTTGGGC 209266
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 182016 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 181957
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 181956 CCCCACGTTGGGC 181944
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 220738 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 220797
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 220798 CCCCACGTTGGGC 220810
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 186847 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 186788
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 186787 CCCACGTTGGGC 186776
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 195904 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 195845
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 195844 CCCACGTTGGGC 195833
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 200827 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 200768
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 200767 CCCACGTTGGGC 200756
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 205617 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 205558
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 205557 CCCACGTTGGGC 205546
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 192060 GCCCGACTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 192001
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 192000 CCCACGTTGGGC 191989
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 216069 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 216128
Query 142564 CCCAC 142568
|||||
Sbjct 216129 CCCAC 216133
Score = 84.2 bits (92), Expect = 4e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 210726 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 210667
Query 142563 CCCCAC 142568
|| |||
Sbjct 210666 CCTCAC 210661
>seq346403
Length=166088
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 14896 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 14837
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 14836 CCCCACGTTGGGC 14824
>seq348991
Length=672809
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 250843 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 250784
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 250783 CCCACGTTGGGC 250772
>seq261373
Length=1765
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1291 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1232
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 1231 CCCACGTTGGGC 1220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1023003942522703
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |