Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq350504 183 6e-41 seq349183 179 7e-40 seq350768 178 2e-39 seq350558 174 3e-38 seq350557 152 9e-32 >seq350504 Length=2770520 Score = 183 bits (202), Expect = 6e-41 Identities = 166/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| ||||| || || || | |||||||| Sbjct 1550137 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1550196 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| || ||||| || || ||||| || |||||||||||||| || || Sbjct 1550197 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 1550256 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| ||| |||||||||||| | || ||||||| ||||||||| || Sbjct 1550257 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 1550316 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| |||||||| Sbjct 1550317 CCGGTCAGGGTCTTCACGAAGATCTGCAT 1550345 Score = 174 bits (192), Expect = 3e-38 Identities = 164/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| ||||| || || || | |||||||| Sbjct 1549909 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1549968 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| || ||||| || || || || || |||||||||||||| || || Sbjct 1549969 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTATCCTGG 1550028 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| ||| |||||||||||| | || || |||| ||||||||| || Sbjct 1550029 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 1550088 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| |||||||| Sbjct 1550089 CCGGTCAGGGTCTTCACGAAGATCTGCAT 1550117 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| ||||| || || || | |||||||| Sbjct 1550365 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1550424 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| || ||||| || || ||||| || ||||||||||| | |||| | Sbjct 1550425 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCACTTTCTTTA 1550484 Query 68373 A 68373 | Sbjct 1550485 A 1550485 >seq349183 Length=1390819 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | | ||||| |||||||| || |||||||| || |||||||| || || || Sbjct 1324231 CCTCCCCTTAAGCGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1324290 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | ||| |||||||| || || || || || ||||| || || Sbjct 1324291 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 1324350 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| || |||||||| ||||| ||||||||| |||||||||||| | || || Sbjct 1324351 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 1324410 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || || | |||||| ||||| |||||||| Sbjct 1324411 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 1324457 Score = 174 bits (192), Expect = 3e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || ||||||||||| |||||||| || || || || || | | Sbjct 1325155 AGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGC 1325214 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| |||||||| || || || || || ||||| || || |||||||| Sbjct 1325215 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCT 1325274 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || ||||| ||||| ||||||| |||||||||||| | || || |||| ||| Sbjct 1325275 TTTTCTTGTATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTG 1325334 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||||| || ||||||||||| || || ||||||||| Sbjct 1325335 ATGGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCATT 1325373 Score = 172 bits (190), Expect = 1e-37 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || |||||||| || |||||||| || || || || || | | Sbjct 1324468 AGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 1324527 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| |||||||| || || || || || ||||| || || ||||| || Sbjct 1324528 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCT 1324587 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| ||||||||| |||||||||||| | || || |||| |||| Sbjct 1324588 TTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 1324647 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || | |||||| ||||| |||||||| Sbjct 1324648 ATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 1324685 Score = 172 bits (190), Expect = 1e-37 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || |||||||| || |||||||| || || || || || | | Sbjct 1324696 AGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 1324755 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| |||||||| || || || || || ||||| || || ||||| || Sbjct 1324756 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCT 1324815 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| ||||||||| |||||||||||| | || || |||| |||| Sbjct 1324816 TTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 1324875 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || | |||||| ||||| |||||||| Sbjct 1324876 ATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 1324913 Score = 163 bits (180), Expect = 5e-35 Identities = 169/221 (76%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || |||||||| || |||||||| || || || || || | | Sbjct 1324924 AGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 1324983 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| |||||||| || || || || || ||||| || || ||||| || Sbjct 1324984 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCT 1325043 Query 68364 TTGTCTTGAATC---TTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAG 68420 |||||||| ||| || ||||||||| |||||||||||| | || || |||| | Sbjct 1325044 TTGTCTTGGATCACCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGG 1325103 Query 68421 GTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| || || || | |||||| ||||| |||||||| Sbjct 1325104 GTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 1325144 >seq350768 Length=2616046 Score = 178 bits (196), Expect = 2e-39 Identities = 167/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| ||||| || || || | |||||||| Sbjct 1876398 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1876457 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| || ||||| || || ||||| || |||||||||||||| || || Sbjct 1876458 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 1876517 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| ||| |||||||||||| | || || |||| ||||||||| || Sbjct 1876518 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 1876577 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || ||||| || ||||| ||||||||| || Sbjct 1876578 CCGGTCAGGGTTTTCACGAAGATCTGCATTTTG 1876610 >seq350558 Length=1915597 Score = 174 bits (192), Expect = 3e-38 Identities = 165/211 (78%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 68255 CAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAA 68314 || ||| || || |||||||| |||||||| ||||| || || || | |||||||| | Sbjct 1692680 CAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAG 1692739 Query 68315 CTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAAT 68374 |||||| ||||| || ||||| || || ||||| || |||||||||||||| || || || Sbjct 1692740 CTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGAT 1692799 Query 68375 CTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCC 68434 ||| ||||| ||| |||||||||||| | || || |||| ||||||||| || || Sbjct 1692800 CTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCC 1692859 Query 68435 CGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || ||||| || ||||| ||||||||| || Sbjct 1692860 GGTCAGGGTTTTCACGAAGATCTGCATTTTG 1692890 >seq350557 Length=1960230 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || ||||||||||| ||||| || ||||| || Sbjct 910645 CCGCCTCGCAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCTGAC 910704 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||| || || ||||| || || | || ||||| ||||| Sbjct 910705 AGAGTGCGGCCATCCTCCAGCTGTTTGCCAGCGAAGATCAGCCGCTGCTGGTCAGGTGGG 910764 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| || || || ||||| ||| |||||||| | || || Sbjct 910765 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 910824 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || ||||| |||||||| || || |||||||| Sbjct 910825 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 910871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 917394653084760