Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq365069 122 7e-23 seq350747 116 3e-21 seq348243 116 3e-21 seq350242 109 5e-19 seq350494 105 6e-18 seq350590 104 2e-17 seq350768 98.7 8e-16 seq350558 98.7 8e-16 seq350504 95.1 1e-14 seq349756 89.7 4e-13 seq350485 82.4 6e-11 >seq365069 Length=475 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| |||||||| |||| ||| | || || || |||||||||||||| || | Sbjct 249 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 190 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| |||||| ||||| || ||||| |||| || | || ||||| |||||| Sbjct 189 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 130 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || |||||||| || ||||| |||| | ||| | || || | || ||||| Sbjct 129 ATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACC 70 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || ||||| || || || ||||||||||| Sbjct 69 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 23 >seq350747 Length=3474718 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| |||||||| |||| ||| | || || || |||||||||||||| || | Sbjct 343453 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 343394 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| |||||| ||||| || ||||| |||| || | || ||||| |||||| Sbjct 343393 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 343334 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||| || || ||||| |||| | ||| | || || | || ||||| Sbjct 343333 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACC 343274 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || ||||| || || || ||||||||||| Sbjct 343273 TCGAGAGTAATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 343227 >seq348243 Length=269726 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| |||||||| |||| ||| | || || || |||||||||||||| || | Sbjct 207282 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 207223 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| |||||| ||||| || ||||| |||| || | || ||||| |||||| Sbjct 207222 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 207163 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||| || || ||||| |||| | ||| | || || | || ||||| Sbjct 207162 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACC 207103 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || ||||| || || || ||||||||||| Sbjct 207102 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 207056 >seq350242 Length=2039022 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| |||| ||| | || || || |||||||||||||| || Sbjct 795391 ACCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 795450 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| | || || | || ||||| ||||| Sbjct 795451 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGGTCAGGAGG 795510 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || || | || ||||| Sbjct 795511 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGAC 795570 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || | ||||| || || || ||||||||||| Sbjct 795571 CTCGAGAGTGATGGTCTTCCTCGTCAGGGTCTTCACGAAAATCTGCAT 795618 >seq350494 Length=1629883 Score = 105 bits (116), Expect = 6e-18 Identities = 158/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 114159 CCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATA 114218 ||||| |||||||| |||| ||| | || || || |||||||||||||| || | | Sbjct 276000 CCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC----AAA 276055 Query 114219 GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATG 114278 ||||| |||||| ||||| || ||||| |||| || | || ||||| |||||||| Sbjct 276056 GTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATT 276115 Query 114279 CCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCC 114338 ||||| || || ||||| |||| | ||| | || || | || || || || Sbjct 276116 CCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCAACCTCG 276175 Query 114339 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | || || || ||||| || || || ||||||||||| Sbjct 276176 AGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 276219 >seq350590 Length=2164919 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| |||||||| |||| ||| | || || || |||||||||||||| || | Sbjct 498800 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 498741 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| |||||| ||||| || ||||| |||| || | || ||||| |||||| Sbjct 498740 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 498681 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || |||| || || ||||| |||| | ||| | || || | || ||||| Sbjct 498680 ATTCCTTACTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACC 498621 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || ||||| || || | ||||| ||||| Sbjct 498620 TCGAAAGTGATGGTCTTCCCCGTCAGGGTCTTCATGAAAATTTGCAT 498574 >seq350768 Length=2616046 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || |||||| || || || || Sbjct 1876410 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 1876469 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || ||||||||||| || || ||||| || Sbjct 1876470 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 1876529 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || ||||||||||| ||| Sbjct 1876530 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTT 1876589 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 1876590 TTCACGAAGATCTGCAT 1876606 >seq350558 Length=1915597 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || |||||| || || || || Sbjct 1692690 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 1692749 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || ||||||||||| || || ||||| || Sbjct 1692750 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 1692809 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || ||||||||||| ||| Sbjct 1692810 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTT 1692869 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 1692870 TTCACGAAGATCTGCAT 1692886 >seq350504 Length=2770520 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || |||||| || || || || Sbjct 1550149 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 1550208 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || ||||||||||| || || ||||| || Sbjct 1550209 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 1550268 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 1550269 ACGTTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 1550328 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 1550329 TTCACGAAGATCTGCAT 1550345 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || |||||| || || || || Sbjct 1549921 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 1549980 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| || || || ||||||||||| || || ||||| || Sbjct 1549981 GCAAAGATGAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 1550040 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 1550041 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 1550100 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 1550101 TTCACGAAGATCTGCAT 1550117 >seq349756 Length=647341 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 || ||||||| |||||| | |||| ||| | || || || |||||||||||| | || Sbjct 144411 TAGCGCCACGAAGTCTCCACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGCAGTCAG 144470 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 || |||| | |||||| ||||| || |||| | |||| || | || ||||| |||| Sbjct 144471 ACAAAGTATGTCCATCTTCTAGTTGCTTGCCAGTGAAGATCAGTCTTTGCTGGTCAGGAG 144530 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 |||| ||||| || | ||||| |||| | ||| | || || | || |||| Sbjct 144531 GAATTCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGA 144590 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | || | | | || ||||||| || || ||||||||||| Sbjct 144591 CCTCGAGAGTGA-TGATCCTCCTATCAGAGTCTTCACGAAAATCTGCAT 144638 >seq350485 Length=1039438 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| |||| |||||||| || | ||| | || || || |||||||||||||| || Sbjct 69709 ACCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 69650 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| ||||| ||||| || ||||| |||| || | || ||||| ||||| Sbjct 69649 CAGAGTACATCCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 69590 Query 114275 AATGCCTTCTTTGTC 114289 ||| ||||| || || Sbjct 69589 AATTCCTTCCTTATC 69575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418255304650596