Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq349686 194 3e-44 seq350466 87.8 3e-12 seq348784 87.8 3e-12 >seq349686 Length=1138722 Score = 194 bits (214), Expect = 3e-44 Identities = 465/692 (67%), Gaps = 25/692 (4%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||||| |||| || || ||| ||||| ||||| || || ||| ||||| || Sbjct 731015 ATCGAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCT 730956 Query 42345 GAGGAGATTGACCTGGCCAAGGACA--CGGCCGGCTGGGAGTCACTGT---CTGAGAACG 42399 |||||| | ||||| ||||||||| | || |||||| | ||| ||||| | | Sbjct 730955 GAGGAGGTGGACCTTTCCAAGGACATTCAGCA--CTGGGAAGCCCTGAAGCCTGAGGA-G 730899 Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459 | | |||| || | | ||||| ||||| || || || |||||||| |||| Sbjct 730898 AGATATTTTATTTCCCATG--TGCTGGCTTTCTTTGCAGCAAGAGATGGCATAGTAAATG 730841 Query 42460 AGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTA 42517 | ||| ||| |||| | |||| || ||| |||| ||||| || || ||||| Sbjct 730840 AAAACTTGGTGGAGCGGTTTAGCCAAGAAGTTCAGATTACT--GAGGCCCGTTGTTTCTA 730783 Query 42518 CGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---A 42574 |||||||| || ||||| || ||| | || ||||| |||| | || |||| | Sbjct 730782 TGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTCATTGA 730726 Query 42575 CACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC 42634 ||| ||||| ||| || || | | || ||||| ||||| ||||||||||| Sbjct 730725 CACTTACATTAAAGATTCCAAAGAAAGGGAATTTCTCTTCAATGCCATTGAGACGATGCC 730666 Query 42635 CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTT 42694 || | |||||||| || || ||||| | |||||| | | || || || | Sbjct 730665 TTGTGTGAAGAAGAAAGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAAGCTACATA 730606 Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGC 42754 || || | ||||||||||| | || || || ||||||||||| || || | || || Sbjct 730605 TGGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGC 730546 Query 42755 CTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813 || || |||||||||||| | ||| | |||||| || ||||| || || || |||| Sbjct 730545 GTCGATATTCTGGCTCAAGAAACGAGGACT-GATGCCTGGCCTCACGTTTTCCAATGAAC 730487 Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACC 42873 | || ||||| |||||||| ||||| | |||||||||||||| ||||| | |||| Sbjct 730486 TTATTAGCAGAGACGAGGGCTTGCATTGTGACTTTGCCTGCCTGATGTTC---AAACACC 730430 Query 42874 TCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCG 42933 | |||||| | || | || | || | || |||| | || || ||| | Sbjct 730429 TGTTGCACAAATCTTCAGAACAGAGAGTAAAAGAAATAATCATCAATGCAGTTAGGATAG 730370 Query 42934 AGAAGGAGTTCCTCACGCAGTCGCTGCCCGTG 42965 | |||||||||||||| || | ||||| ||| Sbjct 730369 AACAGGAGTTCCTCACGGAGGCCCTGCCTGTG 730338 >seq350466 Length=2871019 Score = 87.8 bits (96), Expect = 3e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 ||||||||||| | || || || ||||||||||| || || | || || || || |||| Sbjct 1672391 TGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCGATATTCT 1672332 Query 42766 GGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||||||| | ||| | |||||| || ||||| || || || ||||| || ||||| Sbjct 1672331 GGCTCAAGAAACGAGGACT-GATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGA 1672273 Query 42825 GACGAGG 42831 ||||||| Sbjct 1672272 GACGAGG 1672266 >seq348784 Length=1834159 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || || ||| |||| |||||| |||| || || || || ||||||||||| | || || Sbjct 1484123 GGGGAAAGGGTGGTGGCCTTTGCCGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 1484064 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || |||||||| ||| | | ||| || ||||| |||||||| || || || || || Sbjct 1484063 GCTATATTCTGGCTAAAGAAAAGAGGACTC-ATGCCTGGACTCACTTTTTCCAATGAGCT 1484005 Query 42815 CATCAGCAGGGACGA 42829 ||||||||| || || Sbjct 1484004 CATCAGCAGAGATGA 1483990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 940007244592080