Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq350759 84.2 2e-11 >seq350759 Length=3492976 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || || | ||| || || | |||| |||||||||||||| || || || |||| ||| Sbjct 2680955 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACACCCAGGCCC 2680896 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 ||||||||||||| ||| |||| ||| ||||| ||||| || | | || || || || Sbjct 2680895 ATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGG 2680836 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCAT 20397 || | ||| || || || || ||||| Sbjct 2680835 CAGAGGGCGTGGCATGGGGGGAGGGCCAT 2680807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 439348096071720