Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq99409 82.4 6e-11 >seq99409 Length=605 Score = 82.4 bits (90), Expect = 6e-11 Identities = 73/89 (82%), Gaps = 7/89 (8%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-----GATCTAAG 115583 |||||||| |||||||||||||||| ||||||||||||| ||| | || | ||| Sbjct 99 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAGAGAGGAGCGAGCGACCAAAG 40 Query 115584 GAACCAAAACTGATATATTGAGCCATTCG 115612 |||||| ||||||| || ||||||||||| Sbjct 39 GAACCATAACTGATTTAATGAGCCATTCG 11 Score = 82.4 bits (90), Expect = 6e-11 Identities = 73/89 (82%), Gaps = 7/89 (8%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-----GATCTAAG 114386 |||||||| |||||||||||||||| ||||||||||||| ||| | || | ||| Sbjct 99 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAGAGAGGAGCGAGCGACCAAAG 40 Query 114387 GAACCAAAACTGATATATTGAGCCATTCG 114415 |||||| ||||||| || ||||||||||| Sbjct 39 GAACCATAACTGATTTAATGAGCCATTCG 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395286496600366