Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq365069 141 2e-28 seq348243 136 9e-27 seq350747 132 1e-25 seq350494 129 1e-24 seq350242 127 5e-24 seq350557 120 7e-22 seq350504 120 7e-22 seq350590 118 2e-21 seq350768 113 1e-19 seq350558 113 1e-19 seq66040 95.1 3e-14 seq350714 86.0 1e-11 >seq365069 Length=475 Score = 141 bits (156), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 249 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 190 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || ||||| ||||| | ||| || || || |||||||| | |||| | || | Sbjct 189 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA--- 133 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||||||||||||||| || || || || |||||||| | ||| | || Sbjct 132 GGAATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCG 73 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 72 ACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 23 >seq348243 Length=269726 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 207282 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 207223 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || ||||| ||||| | ||| || || || |||||||| | |||| | || | Sbjct 207222 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA--- 207166 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| ||||||||||| || || || || |||||||| | ||| | || Sbjct 207165 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCG 207106 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 207105 ACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 207056 >seq350747 Length=3474718 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 343453 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 343394 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || ||||| ||||| | ||| || || || |||||||| | |||| | || | Sbjct 343393 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA--- 343337 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| ||||||||||| || || || || |||||||| | ||| | || Sbjct 343336 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCG 343277 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || |||||||| ||||| ||||| ||||| |||||||| Sbjct 343276 ACCTCGAGAGTAATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 343227 >seq350494 Length=1629883 Score = 129 bits (142), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 10/229 (4%) Strand=Plus/Plus Query 288248 CACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGA 288307 |||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 275998 CACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC----A 276053 Query 288308 GCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCTG 288364 || ||||| ||||| | ||| || || || |||||||| | |||| | || | | Sbjct 276054 AAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA---G 276110 Query 288365 GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 | |||||||| ||||||||||| || || || || |||||||| | ||| | || | Sbjct 276111 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCAA 276170 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| ||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 276171 CCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 276219 >seq350242 Length=2039022 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 795392 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 795451 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || ||||| ||||| | ||| || || || || ||||| | |||| | || | Sbjct 795452 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGGTCAGGA--- 795508 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| ||||||||||| || || || || |||||||| | ||| | || Sbjct 795509 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCG 795568 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||||| ||||| ||||| ||||| |||||||| Sbjct 795569 ACCTCGAGAGTGATGGTCTTCCTCGTCAGGGTCTTCACGAAAATCTGCAT 795618 >seq350557 Length=1960230 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||| || || | || ||||| || || || | ||||| || |||||| Sbjct 910681 TCTTTCTGGATATTGTAATCTGACAGAGTGCGGCCATCCTCCAGCTGTTTGCCAGCGAAG 910740 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || | |||||| || || || || |||||||| ||||| || || Sbjct 910741 ATCAGCCGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTC 910800 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| || ||||| ||||| || Sbjct 910801 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACA 910860 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 910861 AAGATCTGCAT 910871 >seq350504 Length=2770520 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | || || || || ||| Sbjct 1549927 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 1549986 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| ||| | || || ||||| ||||||||||| || || |||||||| Sbjct 1549987 ATGAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 1550046 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| ||||| ||| Sbjct 1550047 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 1550106 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1550107 AAGATCTGCAT 1550117 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | || || || || ||| Sbjct 1550155 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 1550214 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||| ||||||||||| || || |||||||| Sbjct 1550215 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 1550274 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || ||||| || ||||| ||||| |||||||| ||||| ||| Sbjct 1550275 TCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 1550334 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1550335 AAGATCTGCAT 1550345 >seq350590 Length=2164919 Score = 118 bits (130), Expect = 2e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 498800 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 498741 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || ||||| ||||| | ||| || || || |||||||| | |||| | || | Sbjct 498740 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA--- 498684 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||||| ||||||||||| || || || || |||||||| | ||| | || Sbjct 498683 GGAATTCCTTACTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCG 498624 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||| ||||| |||||||| ||||| ||||| | ||| || ||||| Sbjct 498623 ACCTCGAAAGTGATGGTCTTCCCCGTCAGGGTCTTCATGAAAATTTGCAT 498574 >seq350768 Length=2616046 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | || || || || ||| Sbjct 1876416 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 1876475 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||| ||||||||||| || || |||||||| Sbjct 1876476 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 1876535 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| || || ||| Sbjct 1876536 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACG 1876595 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 1876596 AAGATCTGCATTTTG 1876610 >seq350558 Length=1915597 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | || || || || ||| Sbjct 1692696 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 1692755 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||| ||||||||||| || || |||||||| Sbjct 1692756 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 1692815 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| || || ||| Sbjct 1692816 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACG 1692875 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 1692876 AAGATCTGCATTTTG 1692890 >seq66040 Length=475 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| ||||||||||| || || || || |||||||| | ||| | || Sbjct 2 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCA 61 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 62 ACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 111 >seq350714 Length=3385031 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| ||||||||||| || || || || |||||| | | ||| | || Sbjct 945948 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCG 945889 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 945888 ACCTCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 945839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1174107700769474