Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq350557 131 2e-25 seq350747 100 3e-16 seq348243 100 3e-16 seq365069 95.1 1e-14 seq350242 91.5 1e-13 seq350768 89.7 5e-13 seq350558 89.7 5e-13 seq350504 89.7 5e-13 seq350494 87.8 2e-12 >seq350557 Length=1960230 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || |||||||| || ||||||||||| || ||||| ||| || Sbjct 910662 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCTGACAGAGTGCGGCCATCCTC 910721 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 |||||||| |||||| |||||| |||||||| || || || |||||||||||||| Sbjct 910722 CAGCTGTTTGCCAGCGAAGATCAGCCGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 910781 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 |||||| |||| | || | |||||| | |||||| || | ||| | || || Sbjct 910782 GATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTT 910841 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| ||||| || || ||||| |||||||| Sbjct 910842 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 910871 >seq350747 Length=3474718 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | || ||||| |||||||| ||||| || Sbjct 343456 GCGCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCA 343397 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || || || || ||||| |||||| || ||||| || ||| Sbjct 343396 GACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA 343337 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | || |||| |||| Sbjct 343336 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCG 343277 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | || || || ||||| || || || ||||||||||| Sbjct 343276 ACCTCGAGAGTAATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 343227 >seq348243 Length=269726 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | || ||||| |||||||| ||||| || Sbjct 207285 GCGCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCA 207226 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || || || || ||||| |||||| || ||||| || ||| Sbjct 207225 GACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA 207166 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | || |||| |||| Sbjct 207165 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCG 207106 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | || || || ||||| || || || ||||||||||| Sbjct 207105 ACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 207056 >seq365069 Length=475 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | || ||||| |||||||| ||||| || Sbjct 252 GCGCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCA 193 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || || || || ||||| |||||| || ||||| || ||| Sbjct 192 GACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA 133 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || || || ||| ||| || ||| | | ||| | || |||| |||| Sbjct 132 GGAATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCG 73 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | || || || ||||| || || || ||||||||||| Sbjct 72 ACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 23 >seq350242 Length=2039022 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | || ||||| |||||||| ||||| || Sbjct 795389 GCACCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCA 795448 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || || || || ||||| | |||| || ||||| || ||| Sbjct 795449 GACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGGTCAGGA 795508 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | || |||| |||| Sbjct 795509 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCG 795568 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | || || | ||||| || || || ||||||||||| Sbjct 795569 ACCTCGAGAGTGATGGTCTTCCTCGTCAGGGTCTTCACGAAAATCTGCAT 795618 >seq350768 Length=2616046 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || |||||||| | ||||| ||| || ||||| || || Sbjct 1876410 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 1876469 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | | |||||| || || || ||||| ||||| ||| ||| || ||| Sbjct 1876470 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 1876529 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | ||| | || ||||||||||| ||| Sbjct 1876530 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTT 1876589 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 1876590 TTCACGAAGATCTGCAT 1876606 >seq350558 Length=1915597 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || |||||||| | ||||| ||| || ||||| || || Sbjct 1692690 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 1692749 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | | |||||| || || || ||||| ||||| ||| ||| || ||| Sbjct 1692750 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 1692809 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | ||| | || ||||||||||| ||| Sbjct 1692810 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTT 1692869 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 1692870 TTCACGAAGATCTGCAT 1692886 >seq350504 Length=2770520 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || |||||||| | ||||| ||| || ||||| || || Sbjct 1549921 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 1549980 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | | ||||||||| || || ||||| ||||| ||| ||| || ||| Sbjct 1549981 GCAAAGATGAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 1550040 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | ||| | || ||||||||||| || Sbjct 1550041 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 1550100 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 1550101 TTCACGAAGATCTGCAT 1550117 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || |||||||| | ||||| ||| || ||||| || || Sbjct 1550149 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 1550208 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | | |||||| || || || ||||| ||||| ||| ||| || ||| Sbjct 1550209 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 1550268 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| ||||| | ||| | || ||||||||||| || Sbjct 1550269 ACGTTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 1550328 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 1550329 TTCACGAAGATCTGCAT 1550345 >seq350494 Length=1629883 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 126888 CACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCA 126947 |||| || | || |||||| | ||| | || ||||| |||||||| ||||| || | Sbjct 275998 CACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC----A 276053 Query 126948 TCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTA 127007 || || ||| || || || || ||||| |||||| || ||||| || ||||| | Sbjct 276054 AAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAA 276113 Query 127008 TGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTT 127067 | || ||||| ||| ||| || ||| | | ||| | || |||| ||| || | Sbjct 276114 TTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCAACCT 276173 Query 127068 CGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || | || || || ||||| || || || ||||||||||| Sbjct 276174 CGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 276219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473319541123920